Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01643 ATGACAAGCAATGGGATGGCGTTTTTTCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTTCTCCTCCATCTCTCAACCCAATTCTTCCTTCTTGCACATCCCAAGATTTTCATGGAGTTGCATCATTTCTAGGAAAACGATCCATGTCGTTTTCAGGGGCGGAAATGGTGGAAGAAGGAAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGGAGACTCAACATGGAGCAAGTGAAAACACTAGAGAAAAATTTCGAACTGGGAAATAAGCTTGAGCCTGAGAGAAAAATGCAGCTGGCTAGAGCCCTTGGTCTACAGCCAAGACAGATTGCTATTTGGTTTCAAAACAGGAGGGCTCGGTGGAAGACTAAGCAGCTAGAGAAAGACTACGATCTTCTCAAGAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCAGAACCAAAAACTTCAAGCAGAGATAATGGGACTAAAAAGTAGAGAGCCAACAGAATCAATCAACCTGAACAAAGAAACAGAGGGATCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATTAAATTGGACATCTCAAGAACACCTGCCATCGATAGTCCTCATCAGCATCAGCATCAGCACCCAACAAACAGGCCTCTTTTTCCCACGTCTTCCTTGAGGCCTCCAGCTTTGGCTCAGCTCTTTCAAACCTCCTCAAGATCATCGGACCCACCAAAGCAACTTGATAACAACAACCACCACCATCATCATCAAATGCCCAAAGAAGAAAACACCAGCTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAGCAACATTTCAACTGA 912 43.64 MTSNGMAFFPANFMLQTSHEDHDHHHHSSPPSLNPILPSCTSQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSQNQKLQAEIMGLKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHPTNRPLFPTSSLRPPALAQLFQTSSRSSDPPKQLDNNNHHHHHQMPKEENTSLSNMFCGMDDHSGFWPWLEQQHFN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8287930 8290868 - CmaCh04G016430.1 Cma04g01643 292724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01643 303 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677
Cma04g01643 303 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677
Cma04g01643 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 303 - -
Cma04g01643 303 MobiDBLite consensus disorder prediction 176 281 - -
Cma04g01643 303 Coils Coil 132 180 - -
Cma04g01643 303 MobiDBLite consensus disorder prediction 260 275 - -
Cma04g01643 303 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Cma04g01643 303 SMART HOX_1 83 144 IPR001356 GO:0003677
Cma04g01643 303 MobiDBLite consensus disorder prediction 188 210 - -
Cma04g01643 303 SUPERFAMILY Homeodomain-like 74 142 IPR009057 -
Cma04g01643 303 MobiDBLite consensus disorder prediction 217 259 - -
Cma04g01643 303 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Cma04g01643 303 MobiDBLite consensus disorder prediction 65 85 - -
Cma04g01643 303 Pfam Homeobox associated leucine zipper 140 180 IPR003106 GO:0006355|GO:0043565
Cma04g01643 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 303 IPR045224 GO:0003700
Cma04g01643 303 Pfam Homeodomain 85 138 IPR001356 GO:0003677
Cma04g01643 303 CDD homeodomain 85 141 IPR001356 GO:0003677
Cma04g01643 303 Gene3D - 77 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01643 Cma-Chr4:8287930 Cma04g02756 Cma-Chr4:18528070 1.22E-81 dispersed
Cma15g00281 Cma-Chr15:1338846 Cma04g01643 Cma-Chr4:8287930 6.68E-76 wgd
Cma18g01164 Cma-Chr18:9324568 Cma04g01643 Cma-Chr4:8287930 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34890 PF00046 Homeodomain 3.00E-15 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01643 K09338 - csv:101221595 533.487