Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01644 ATGAGCCCCGGTGGTTATACGGTCGAAGTGACGGGCTTGTCTCCTAAAGCCGAAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTGTGGCCCAATCGAGCTCGTTGAGATTATTAGATCTGGTGAAGATGCCTGCACTGCCTATGTGACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTACTGAGTGGTGCAACAATTGTAGATCAACGAGTGTGCATAACACGGTGGGGACATTTTGATGATGAATTTGGTTTCTGGAGTAGGCCTTCCGGTTACCATGAAGAAGACAGTACTGCTTCGGCACAAAGAAGTCAGTTTATTTCCAGCGCTGGTAACGCAGTGACCATGGCCCAGGAAGTAGTCAAAACCATGCTGTCCATGGGTTACGTGCTGGGCAAAGATGCATTAACCAAAGCCAAAACCTTTGATGAATCTCATCAGGTCTCAGCAACCGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGTCTAACTGACATGATAGGTGCGGGTTTTGAAGCAGTTAAAACCATGGATGAGAAGTACCACGTATTGCAGACCACCAAATCAGCTATATCTGCCACAGGAAGAACAGCTGCTGCCGCTGCCGATACCGTGGTCCAAAGTGGCTACTTCTCTAGGGGAGCTCTTTTCGTGTCGGATGCCCTGAATCGAGCAGCCAAAGTTGCTGCTGACTTGGGTAGTCGTGGTGTTGAGCATTAA 732 47.81 MSPGGYTVEVTGLSPKAEEKDVLDFFAFCGPIELVEIIRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFDDEFGFWSRPSGYHEEDSTASAQRSQFISSAGNAVTMAQEVVKTMLSMGYVLGKDALTKAKTFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTMDEKYHVLQTTKSAISATGRTAAAAADTVVQSGYFSRGALFVSDALNRAAKVAADLGSRGVEH 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8294767 8298562 - CmaCh04G016440.1 Cma04g01644 292725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01644 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 70 IPR000504 GO:0003723
Cma04g01644 243 Gene3D - 5 76 IPR012677 -
Cma04g01644 243 SMART rrm1_1 7 77 IPR000504 GO:0003723
Cma04g01644 243 SUPERFAMILY RNA-binding domain, RBD 5 78 IPR035979 GO:0003676
Cma04g01644 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 72 IPR000504 GO:0003723
Cma04g01644 243 CDD RRM_Vip1_like 8 76 IPR034360 -
Cma04g01644 243 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 242 - -
Cma04g01644 243 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 242 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01644 Cma18g01164 CCT
Cma04g01644 Cma18g01164 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01644 Cma-Chr4:8294767 Cma04g02758 Cma-Chr4:18543307 2.06E-87 dispersed
Cma04g01644 Cma-Chr4:8294767 Cma18g01164 Cma-Chr18:9324568 6.46E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01644 - - csv:101221355 426.017