Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01646 ATGGATCGGAAAGACGAAGACGAAGAACAAGAAGAAGAAGAAGACGACGAGGAAGACGAAGAATATAAGCAGCTGTGGGATTCTCTTATTTTTGTTTTTTTGACTAGGAAAGAGAAGGAAGAACACATCGGATCGGATTGGAACTCTGAAATTTCGCCCCCCTTTTTATTTGTTGCATCTGAGAGCGATATGTTGGAGGATCGCTCGTTTCTAGCGTCCAGGGTGTTCTCAAGCTCTTGCCAGCACCAAACTCAGTTGGCTTGCTTTAACTTAACGTGTCGACTCGAGGTTGGAATGGGAAATGGCAAACGCCCATCAGATCATGATGCCCATTCACTTCTTCCATCCTCCACTTCTTCTCATAGAAACGTCAGGCCTCGATCTTCCTCGGATCATCCAAATCACGACTCCCATTCCGGCAACACTTCTGATTCCGCCACTCTGTTCTCTTCCATTGATCGGGACAACTCTATTAACTGCTTAATTCGCTGCTCTCGCTCCGATTATGGTTCTATTGCGTCCTTGAGTCGAAGTTTCCGTTCCTTAATTCGTAGTGGGGAGCTCTACAAGCTGAGGCGTTTGAACCATGTGATTGAGCACTGGGTTTACTTCTCTTGCCATCTTCTCGAGTGGGAGGCTTTTGATCCAATTCAGCGTAGATGGATGCATTTGCCCAGGATGGATTCTAATGAATGTTTCATGTGCTCGGATAAGGAATCCTTAGGAGTGGGGACTGATCTTCTTGTTTTTGGTAAGGATTTAAATTCCCATGTCACTTATAGATATAGTATATTGACAAATTCGTGGTGTCCTGGAGTGAGTATGAATGACCCCAGATGCTTGTTTGGGTCTGCTAGTCTAGGGGAGATAGCCATTTTAGCTGGTGGGTGTGATTCCAAAGGCAACATCCTTAACACTGCGGAGCTCTACAATTCCGAGACTGAAACATGGGTCACCCTTCCCAATATGACCAAACCAAGGAAGCTGTGTTCTGGGGTGTTCATGGACGATAAATTCTATGTGATTGGGGGAGTTGGAGGAAGTGAGGGGAAGGTTCTTACATGCGGGGAAGAGTACGATTTAGAAAGTGGGAAGTGGACTGAAATTCCCAACATGTCACCTGGGCGGAGTGCTGCAGTTAGGGATAGTGAAAGTGCGGCAGCTGAAGCGCCCCCTCTACTTGCTGTGGTGAACAACGAGCTGTATGCTGCAGATCACACTGACATGGAGGTGAGGAAATACGACAAGGAGAAGAGAGTATGGTCTACAGTAGGGAGGTTGCCTGAACGAGCAGTTTCAACAAATGGTTGGGGGCTTGCGTTTAGAGCCTGTGGAGATAGGCTAATAGTGATTGGTGGACCAAGGGCGATGGGGGAAGGGTATATAGAGCTGAATTCATGGGTTCCAAGTGAAGGCCCTCCAAGGTGGGATTTGCTTGCAAGGAAGCCATCTGCTAATTTTGTGTATAACTGCGCTGTGATGGGATGCTGA 1491 47.08 MDRKDEDEEQEEEEDDEEDEEYKQLWDSLIFVFLTRKEKEEHIGSDWNSEISPPFLFVASESDMLEDRSFLASRVFSSSCQHQTQLACFNLTCRLEVGMGNGKRPSDHDAHSLLPSSTSSHRNVRPRSSSDHPNHDSHSGNTSDSATLFSSIDRDNSINCLIRCSRSDYGSIASLSRSFRSLIRSGELYKLRRLNHVIEHWVYFSCHLLEWEAFDPIQRRWMHLPRMDSNECFMCSDKESLGVGTDLLVFGKDLNSHVTYRYSILTNSWCPGVSMNDPRCLFGSASLGEIAILAGGCDSKGNILNTAELYNSETETWVTLPNMTKPRKLCSGVFMDDKFYVIGGVGGSEGKVLTCGEEYDLESGKWTEIPNMSPGRSAAVRDSESAAAEAPPLLAVVNNELYAADHTDMEVRKYDKEKRVWSTVGRLPERAVSTNGWGLAFRACGDRLIVIGGPRAMGEGYIELNSWVPSEGPPRWDLLARKPSANFVYNCAVMGC 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8308596 8312614 + CmaCh04G016460.1 Cma04g01646 292727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01646 496 SMART kelc_smart 290 337 IPR006652 GO:0005515
Cma04g01646 496 SMART kelc_smart 338 382 IPR006652 GO:0005515
Cma04g01646 496 SMART kelc_smart 246 289 IPR006652 GO:0005515
Cma04g01646 496 MobiDBLite consensus disorder prediction 102 144 - -
Cma04g01646 496 Gene3D - 196 479 IPR015915 GO:0005515
Cma04g01646 496 Pfam Kelch motif 278 323 IPR006652 GO:0005515
Cma04g01646 496 Pfam Kelch motif 326 373 IPR006652 GO:0005515
Cma04g01646 496 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 64 496 - -
Cma04g01646 496 MobiDBLite consensus disorder prediction 1 22 - -
Cma04g01646 496 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 64 496 - -
Cma04g01646 496 SUPERFAMILY Kelch motif 208 493 IPR015915 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01646 - - - csv:101220882 781.941
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01646 Cma18g01163 CCT
Cma04g01646 Cma18g01163 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01646 Cma-Chr4:8308596 Cma13g01118 Cma-Chr13:8343049 5.34E-172 dispersed
Cma01g00776 Cma-Chr1:4194558 Cma04g01646 Cma-Chr4:8308596 1.53E-127 wgd
Cma18g01163 Cma-Chr18:9312458 Cma04g01646 Cma-Chr4:8308596 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g886 . Blo16g01122 . Bda11g01225 Bpe13g01419 Bpe10g00862 Bma14g01637 Bma15g00165 Cmo04g01725 Cmo18g01186 . Cma18g01163 . Car18g01072 . Cpe09g00167 Cpe01g01456 Bhi07g01584 Tan04g1095 . . . . . Cla05g02456 Cam05g2642 Cec05g2675 Cco05g2712 Clacu05g2645 Cmu05g2499 Cre05g2613 Cone13ag0964 Cone19ag0956 Cone6ag0600 Cone9ag0605 Lsi04g00439 Csa05g02435 Chy10g00988 Cme10g00430 Blo06g00901 . Bda07g01463 Bda11g01225 Bpe11g01636 . . Bma06g00678 . . . Cma04g01646 . Car04g01687 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003256 3 4 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 0 1 1 1 1 3 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01646 Cma_Chr04 FPKM 59.726357 68.214874 132.528595 137.116287 16.209452 19.70055 17.292868 70.949341 72.228424 69.191788