Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01649 ATGGATGGTGAAAATGGGATCCGGAGACCTAATTTTCCATTACAATTGTTGGAGAAAAAAGAAGAAGAACACCCATGTTCCACCTCCGCAAACAACGGAACAACGACAACCATATCAACAACGACAACGGTGAATCCGAATCTTCAATCTTCTTCGCCTAAGAAGCCACCTCCCAAAAGGGCTACTACCAAAGATCGTCACACGAAAGTCGATGGCCGTGGCCGGAGGATTCGGATGCCGGCCCTTTGCGCCGCTAGGGTTTTTCAGCTTACTAGAGAGCTTGGTCATAAGTCCGACGGTGAAACTATAGAGTGGCTGTTGCAGCAGGCGGAGCCGGCTGTCATCGCCGCCACTGGTACAGGTACAATTCCGGCTAATTTCACCTCGCTTAATATTTCTCTCCGTAGTTCCGGCTCCACCATTCTTGCTCCTTCTCACCTCCGGACGAGCTATTTCAGTCCCACACAATTCGCCGTCAGAACAAGATCTGATCTTTGGGATAGGAGTAATAATAATAATAATAATAATAATACTCTGGTCGATGATTCCTCTACATTTTTGAATTTCAATTCTCCTAATTACATCAACGCATTCAAGCACGATCAGGGTGGGATTGATGTAACGGACGCTGGAAAGAAACGGCGGCCGGAGCATTCGGAATCGTCATCGGAGAATCCGGTGGGGAATTATTTGGTTCAATCGAGTACCGGGTCGATTCCGGCGGGTCACAGCACTCCGGTGCCGGCAACATTTTGGATGGTGACGAATCCTAGCAATCAAGCGAGTGATCCGATGTGGACATTTCCGTCGGTGAGTAACAGCAGCATGTTCAGAGGGGGAAGCGGAGGTGGTGGCGGCGGGGGGTTTCATTTCATGAATCTTCCACCACCAATGGCTCTTTTGCCAACTGGGCAACAAGTGGGGTCAGGGATCGGGGGTGGTAGCGGTGGTCCGGCGACCGACACCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGGACGATACCGGGTGTGTCAATTTCAGAATCTCCGACAAGAGGAGCGGCGGGTGTTCATCAAGGTGGAAATGAGGCTCATGATTCCACTTCTAATCATGGGAAGACTTTTAAGAAACCTCGACGTCCTTATGAGAAGGAGCGTTTGGATGCAGAACTTAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGGGAGCTGTGGAGGGTTCAATATGCATTGAGCCGAATCCGTAATAATGCCAGGATGCTTTTAACTCTTGACGAAAAGAATCCCCGTAGGATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGATACGGTCTTTTGGATGAGAGTCAAAATAAGCTCGATTATGTCTTGGCTCTTACTGTCGAGAATTTCCTTGAGCGTCGTCTTCAAACTCTCGTGTTCAAGTCTGGAATGGCCAAGTCTATCCACCATGCCAGAGTGCTCATCAGACAGAAGCATATAAGGGTTGGAAGGCAAGTTGTTAACATCCCTTCTTTCATGGTAAGAGTCGATTCCCAGAAGCACATAGACTTCTCTCTCACTAGTCCGTTTGGAGGTGGACGTCCCGGAAGGGTGAAGAGAAAGAACCAGAAGGCAGCTGCCAAGAAGGCCGCAGGTGGGGATGGAGATGAAGAAGATGAAGATTGA 1662 48.98 MDGENGIRRPNFPLQLLEKKEEEHPCSTSANNGTTTTISTTTTVNPNLQSSSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTILAPSHLRTSYFSPTQFAVRTRSDLWDRSNNNNNNNNTLVDDSSTFLNFNSPNYINAFKHDQGGIDVTDAGKKRRPEHSESSSENPVGNYLVQSSTGSIPAGHSTPVPATFWMVTNPSNQASDPMWTFPSVSNSSMFRGGSGGGGGGGFHFMNLPPPMALLPTGQQVGSGIGGGSGGPATDTHLGMLAALSAYRTIPGVSISESPTRGAAGVHQGGNEAHDSTSNHGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDGDEEDED 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8317424 8322416 - CmaCh04G016490.1 Cma04g01649 292730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01649 553 MobiDBLite consensus disorder prediction 1 72 - -
Cma04g01649 553 CDD S4 465 509 - -
Cma04g01649 553 SMART s4_6 465 536 IPR002942 GO:0003723
Cma04g01649 553 SMART Ribosomal_S4_2 364 464 IPR001912 GO:0019843
Cma04g01649 553 MobiDBLite consensus disorder prediction 205 221 - -
Cma04g01649 553 Pfam S4 domain 465 508 IPR002942 GO:0003723
Cma04g01649 553 Pfam TCP family transcription factor 62 167 IPR017887 -
Cma04g01649 553 TIGRFAM uS4_arch: ribosomal protein uS4 366 522 IPR005710 GO:0003735|GO:0006412|GO:0015935
Cma04g01649 553 MobiDBLite consensus disorder prediction 27 57 - -
Cma04g01649 553 MobiDBLite consensus disorder prediction 345 376 - -
Cma04g01649 553 MobiDBLite consensus disorder prediction 519 553 - -
Cma04g01649 553 Pfam Ribosomal protein S4/S9 N-terminal domain 365 464 IPR001912 GO:0019843
Cma04g01649 553 ProSitePatterns Ribosomal protein S4 signature. 463 487 IPR018079 GO:0019843
Cma04g01649 553 PANTHER 40S RIBOSOMAL PROTEIN S9-2-LIKE 365 553 - -
Cma04g01649 553 MobiDBLite consensus disorder prediction 202 230 - -
Cma04g01649 553 Gene3D - 464 521 IPR036986 GO:0003723
Cma04g01649 553 PANTHER 30S 40S RIBOSOMAL PROTEIN 365 553 IPR022801 -
Cma04g01649 553 ProSiteProfiles S4 RNA-binding domain profile. 465 536 - -
Cma04g01649 553 ProSiteProfiles TCP domain profile. 63 117 IPR017887 -
Cma04g01649 553 SUPERFAMILY Alpha-L RNA-binding motif 368 515 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01649 Cma18g01161 CCT
Cma04g01649 Cma18g01161 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00854 Cma-Chr1:4808268 Cma04g01649 Cma-Chr4:8317424 2.42E-135 dispersed
Cma04g01649 Cma-Chr4:8317424 Cma09g01310 Cma-Chr9:9147764 4.95E-135 dispersed
Cma04g01884 Cma-Chr4:9708161 Cma04g01649 Cma-Chr4:8317424 3.88E-134 transposed
Cma14g01145 Cma-Chr14:8963763 Cma04g01649 Cma-Chr4:8317424 9.37E-11 transposed
Cma10g00186 Cma-Chr10:850757 Cma04g01649 Cma-Chr4:8317424 8.99E-95 wgd
Cma18g01160 Cma-Chr18:9296551 Cma04g01649 Cma-Chr4:8317424 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34892 PF00163 Ribosomal_S4 5.30E-07 CL0492 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01649 - - cmax:111485089 667.537