Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01658 ATGGAGACCCAAAGCCAGCTTCCATCCCCACAGTTTCAGCTTAAAGGCACCACCTTCCTAAGAACTTGCATCAATGGAATCAATGCATTATCAGGTGTGGGGACATTATCAATTCCCTTTGCGCTTTCTCAAGGAGGGTGGCTTAGCTTGATCCTTCTCTCCTTGGTGGCAGTTGTTTGTTGGTATACGGGCTTACTTCTAAAGCGTTGTATGGACGCAAATCCAAGTGTGAGGACTTACTCTGATATTGGGTGGTTGGCTTTTGGATTCAAGGGAAAAATAATGGTGTCCATTTTTGTTTACATGGAGTTGTATTTGGTGGCTGTTGAGTTCTTGATATTAGAAGGTGATAATCTACAGAAGCTTTTTCCAAGCTCGGGTTTCAAAGTTGGGAGTGTGAGTGTTGAAGGGAAGCAGATGTACATGGTGTTGGCTGCTGTTTTCATACTGCCAACCACATGGCTCAAGAGTTTGGGATTGCTAGCTTATGTTTCTTTTGGTGGGGTTTTGGCTTCTGCTGTTTTGGTTTTGTGTGTTGCTTGGGTTGGTGCTGTTGATGGTGTTGGATTCAACCAAAGAGATGAGCTTTTGAAACTACAAGGATTGCCCACCACTCTAAGCTTGTTTCTCTTTTGTTATTGTGGACATGCTGTTTTCCCAATGCTTTGCAACTCCATGAACAATAAAACCCAATTTCCAAAGGTTCTAATGGTTTGCTTTGTGGCAAGCACGATGAGTTATGGTTCGATGGCTATATTGGGGTACCTAATGTATGGGGAAAATATAAAGTCACAAGTGACTTTAAATCTTCCAACGCACAAAACCAGCACAAAAATAGCCATTTACACGACCCTCATCAATCCCATCACCAAATATGCAGCCATCATAAACCCAATTGCTATGGCCATAGAAGAGGCATCTCGTTTGCTCGCCACTCGGAGCATGGCCATCCTGATGAGAACTCTGCTTCTCTTCACCACCCTCATTCTGGCTTTGTCCATTCCCTTTTTTGTGTATGTTATGGCTTTTACAGGCGCATTCTTAAGCGTAACCAATTGCATTCTCATCCCATGTTTATGCTACCTCAAGATCAACAAATCTGCACGTAAATTTGGATGGGAGTTGGTGGTGATTGTGGGAATTTTAGTGATGGGGTTTTCTGTTGGTATCTTAGGAACATGTTCTTCTATAAAGGAAATTGTAAAGCGTTTATGA 1215 42.55 METQSQLPSPQFQLKGTTFLRTCINGINALSGVGTLSIPFALSQGGWLSLILLSLVAVVCWYTGLLLKRCMDANPSVRTYSDIGWLAFGFKGKIMVSIFVYMELYLVAVEFLILEGDNLQKLFPSSGFKVGSVSVEGKQMYMVLAAVFILPTTWLKSLGLLAYVSFGGVLASAVLVLCVAWVGAVDGVGFNQRDELLKLQGLPTTLSLFLFCYCGHAVFPMLCNSMNNKTQFPKVLMVCFVASTMSYGSMAILGYLMYGENIKSQVTLNLPTHKTSTKIAIYTTLINPITKYAAIINPIAMAIEEASRLLATRSMAILMRTLLLFTTLILALSIPFFVYVMAFTGAFLSVTNCILIPCLCYLKINKSARKFGWELVVIVGILVMGFSVGILGTCSSIKEIVKRL 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8354370 8356443 + CmaCh04G016580.1 Cma04g01658 292739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01658 404 Pfam Transmembrane amino acid transporter protein 16 395 IPR013057 -
Cma04g01658 404 PANTHER OS06G0228500 PROTEIN 13 402 - -
Cma04g01658 404 PANTHER OS05G0424000 PROTEIN-RELATED 13 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01658 K15015 SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter) - csv:101204828 572.392
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01658 Cma-Chr4:8354370 Cma18g00662 Cma-Chr18:6076920 8.68E-174 dispersed
Cma04g01658 Cma-Chr4:8354370 Cma15g00474 Cma-Chr15:2109147 4.45E-114 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g918 Blo01g00429 . Bda01g02153 . . . . . Cmo04g01736 . . . . . . . Cpe01g01465 . . . . . . . . . . . . . . . . Cone6ag0582 . Lsi04g00425 Csa05g02453 Chy10g01003 Cme10g00414 . . . . . Bpe02g02340 Bma01g00101 . . . . Cma04g01658 . Car04g01698 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000580 6 2 3 3 5 2 3 2 2 5 2 2 3 4 3 3 2 4 3 2 3 4 5 3 4 3 6 3 5 7 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01658 Cma_Chr04 FPKM 1.711656 1.596477 0.141407 0.0 0.974194 0.304647 0.866789 0.0 0.0 0.0