Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01660 ATGAAGCCCAGCTACTCCATTTTCATATTCAACCTTCTTCTCTTGCAGTATCTATCACCCCTTTGTCTTGCTCAGGATTTCGATTTCTTTTACTTTGTTCAGCAGTGGCCCGGAGCATATTGCAATTCAAAGCAACACCGGTGCTGCTATCCCAAAACAGGAAGGCCATCTGCAGATTTCGGGATTCATGGTCTCTGGCCTAATTACAAAGATGGAGGTTACCCATCCAACTGCAATTCCAACAGCGCTTTCGACCGAACCCAGATCTCAGAAGCATTAAGCAGCATGCAAAAGGACTGGCCATCATTAAGCTGTCCCAGCAGCGATGGGTTAAGATTTTGGTCACACGAATGGGAGAAACATGGGACATGCTCAGAGTCTGAACTCGACCAGAAAGAGTACTTCGAAGCAGCTATCAAACTGAAGGAGAAGGCCAATCTCCTCAACCTCCTTAATGATGCAGGAATTGAAGCAAATGACGAGTTTTACAGTTTGGAGAGTATCAGAGAGGCGATACGGAAAGGGGTTGGGTTTACTCCGGGGATTCAATGTAACAAGGATTCAGGTGGGCACAGTCAACTGTACCAGGTTTATTTATGTGTGGATACCTCTGGTTCTGAGTTCATTAAATGCCCTGTTCTTCCCAGGGGAAAATGTTCTTCAAGTATTCAATTCCCCAAGTTCTAA 687 45.27 MKPSYSIFIFNLLLLQYLSPLCLAQDFDFFYFVQQWPGAYCNSKQHRCCYPKTGRPSADFGIHGLWPNYKDGGYPSNCNSNSAFDRTQISEALSSMQKDWPSLSCPSSDGLRFWSHEWEKHGTCSESELDQKEYFEAAIKLKEKANLLNLLNDAGIEANDEFYSLESIREAIRKGVGFTPGIQCNKDSGGHSQLYQVYLCVDTSGSEFIKCPVLPRGKCSSSIQFPKF 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8361173 8362247 + CmaCh04G016600.1 Cma04g01660 292741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01660 228 SUPERFAMILY Ribonuclease Rh-like 22 227 IPR036430 GO:0003723|GO:0033897
Cma04g01660 228 PANTHER RIBONUCLEASE T2 5 228 IPR001568 GO:0003723|GO:0033897
Cma04g01660 228 CDD RNase_T2_euk 27 222 IPR033697 -
Cma04g01660 228 ProSitePatterns Ribonuclease T2 family histidine active site 2. 113 124 IPR033130 -
Cma04g01660 228 Gene3D - 21 228 IPR036430 GO:0003723|GO:0033897
Cma04g01660 228 PANTHER F7A19.32 PROTEIN 5 228 - -
Cma04g01660 228 Pfam Ribonuclease T2 family 27 211 IPR001568 GO:0003723|GO:0033897
Cma04g01660 228 ProSitePatterns Ribonuclease T2 family histidine active site 1. 60 67 IPR018188 GO:0003723|GO:0033897
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01660 K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] - csv:101218904 391.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01660 Cma-Chr4:8361173 Cma18g01150 Cma-Chr18:9249495 1.34E-98 dispersed
Cma04g01659 Cma-Chr4:8359336 Cma04g01660 Cma-Chr4:8361173 4.06E-95 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g920 . . . . . Bpe10g00875 . Bma15g00155 Cmo04g01738 . . . . . Sed06g0633 . Cpe01g01467 Bhi07g01564 Tan04g1076 Cmetu04g1025 Lac13g0321 Hepe10g1745 . . . . . . . . . . . . . Lsi04g00423 Csa05g02454 . Cme10g00413 . . . . . . . . . . . Cma04g01660 . Car04g01699 . Cpe13g00953 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002941 1 2 0 1 2 1 2 1 1 1 1 2 3 1 2 3 2 3 3 2 1 2 1 2 2 2 2 3 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01660 Cma_Chr04 FPKM 33.657021 35.124802 4.900686 3.814137 8.118559 10.595333 9.271917 0.0 0.194586 0.0