Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01668 ATGGCTTCTGTCCTTGTCTTTTTGGCAGCTTTCTATGCCATAGTGTCCTCTGTTGATGCCTATGCAGGTGGAGGCTGGACTAGTGCTCACGCCACCTTCTATGGTGGGAGTGATGCTTCTGGGACGATGGGTGGGGCTTGTGGGTATGGCAACTTATATAGCCAAGGCTATGGGACAAACACTGCTGCTCTGAGTACGGCTCTGTTCAACAATGGGTTGAGCTGTGGGTCTTGCTATGAGATTAGGTGTGCCAGTGACCCTAAATGGTGCTTGCCAGGCTCCATTGTGGTAACAGCCACCAATTTCTGTCCTCCAAACAATGCCCTACCCAACAACGCTGGAGGCTGGTGCAACCCTCCTCTACAACACTTTGATCTCTCTCAGCCTGTATTCCAACACATTGCTCAGTATAAAGCAGGAATTGTGCCTGTTGCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGTATAAGATTCACCATCAATGGGCACTCCTACTTCAACCTGGTCCTCATCACAAACGTGGGTGGTGCTGGTGATGTACACGCAGTTTCCATCAAAGGATCAAGAACTGGTTGGCAAGCAATGTCTAGGAACTGGGGACAGAACTGGCAGAGCAACAGCTACCTCAATGGCCAAAGCCTGTCCTTCAAGGTCACTACCAGCGACGGCCGCACAGTCATCGCTAACAACGCTGTCCCAGCCGGCTGGTCCTTTGGACAGACATACAGTGGTGCCCAATTCTGA 747 51.54 MASVLVFLAAFYAIVSSVDAYAGGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCASDPKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLSQPVFQHIAQYKAGIVPVAYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVIANNAVPAGWSFGQTYSGAQF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8389926 8391473 - CmaCh04G016680.1 Cma04g01668 292749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01668 248 SUPERFAMILY Barwin-like endoglucanases 7 174 IPR036908 -
Cma04g01668 248 Gene3D - 156 248 IPR036749 -
Cma04g01668 248 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Cma04g01668 248 Gene3D - 12 152 IPR036908 -
Cma04g01668 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Cma04g01668 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Cma04g01668 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Cma04g01668 248 PANTHER EXPANSIN-A15 7 248 IPR002963 GO:0009664
Cma04g01668 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Cma04g01668 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Cma04g01668 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cma04g01668 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Cma04g01668 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Cma04g01668 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Cma04g01668 248 PANTHER EXPANSIN 7 248 - -
Cma04g01668 248 SMART dpbb_1 61 146 IPR007112 -
Cma04g01668 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Cma04g01668 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Cma04g01668 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Cma04g01668 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Cma04g01668 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Cma04g01668 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Cma04g01668 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Cma04g01668 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Cma04g01668 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Cma04g01668 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00107 Cma-Chr4:526955 Cma04g01668 Cma-Chr4:8389926 1.73E-142 dispersed
Cma04g01067 Cma-Chr4:5503188 Cma04g01668 Cma-Chr4:8389926 6.13E-142 dispersed
Cma04g01668 Cma-Chr4:8389926 Cma15g00164 Cma-Chr15:757817 6.66E-142 dispersed
Cma05g00323 Cma-Chr5:1398559 Cma04g01668 Cma-Chr4:8389926 7.97E-119 dispersed
Cma07g00999 Cma-Chr7:5154276 Cma04g01668 Cma-Chr4:8389926 1.51E-124 dispersed
Cma12g00395 Cma-Chr12:2036429 Cma04g01668 Cma-Chr4:8389926 1.72E-121 dispersed
Cma13g00123 Cma-Chr13:843427 Cma04g01668 Cma-Chr4:8389926 3.41E-125 dispersed
Cma20g00396 Cma-Chr20:1904421 Cma04g01668 Cma-Chr4:8389926 1.24E-126 dispersed
Cma01g00793 Cma-Chr1:4282436 Cma04g01668 Cma-Chr4:8389926 5.18E-120 wgd
Cma01g00479 Cma-Chr1:2422883 Cma04g01668 Cma-Chr4:8389926 3.79E-149 wgd
Cma10g00197 Cma-Chr10:888640 Cma04g01668 Cma-Chr4:8389926 6.42E-141 wgd
Cma11g00138 Cma-Chr11:744009 Cma04g01668 Cma-Chr4:8389926 1.64E-148 wgd
Cma15g00264 Cma-Chr15:1261381 Cma04g01668 Cma-Chr4:8389926 5.19E-138 wgd
Cma18g01138 Cma-Chr18:9207304 Cma04g01668 Cma-Chr4:8389926 1.06E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01668 - - csv:101217956 501.901