Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01674 ATGACGAGAGCTTTTAGAAGACGAAGTCTGTGTTCAAGGCCCATAGATCGTCTCCGATTCCAGGCATCGGCGGACGGTGCTCCGAAATCGGGATTCCTCAGAGATATGAAGGTGAAGGAGATCTTTACTTATTTGCTTATAGGTCTTCCGTTGGTCGTTTTTGTTGTTTTGGTGTTCAGGAATCCGGCGGCGGATCTCTCTTTGGGTTTTGCTGAAGCCAGAGCATTGGAAAGAGTGGTCACTAATGGCAGTTCTGAGAGTTCAGGTTCAGAAAACGGTTTCTCTAGACTCTCCAATAGAGACAAGCTTATTGGAGGCCTTCTCATTCCTGGATTTGATGAAGGATCATGCTTGAGTAGATATCAATCCAGTTTATATCGAAGAACTTTGACCCACAGACCGTCTCCTTACCTCCTCTCGAAGCTTAGAGACTATGAAGCGCTTCATCGACGATGTGGTCCGCATACAAAACTATATGATGAAGCAGTAGAGCAGCTCAGATCTGGCAGTAGTGTTCGTTTGACAGAGTGTAAATATGTTGTGTGGATGTCTTATAGTGGCTTGGGAAATAAGATACTCACTTTGGCTTCTGCATTCCTCTATGCCGTTCTTACCGATCGTGTCTTGCTTGTCGATCCGGGGAAGGATATGGCTGATCTATTTTGTGAGCCCTTCCCAGAAAAAACTTGGCTGCTACCAAATGACTTCCCCTTGATGGATCAATTCAGCAACTTTAATCAGAAATCTCCTAATTGTCATGGATATATGCTTAAGACGAACACTCTAAACGAATCGACAGAAGCGCTCCCATCCTATCTATACCTACATTTGGTTCATGATTATGATGATCATGACAAGCTTTTCTTCTGTGATCAAGAACAGGCTCTTTTAAGTAGGGTCCCTTGGCTGATACTCAAGACAGATAACTACTTTGTTCCATCTCTCTTCCTGATCCCGTCTTTCGAGCACGAACTGAGTAACTTATTCCCCCAAAAAGACAACGTGTTTCATCATCTGGGTCAATATCTTTTCCACCCATCGAATCACGTTTGGGGACTGATTACGAGATACTACGAAGCATATCTGTCAAGTGCAGATGAAGTGATAGGAATTCAAGTAAGAGTGTTCGAGAGTGGATCGGGACCATTCGAACATATAATGGATCAGATTTTAAGCTGTACTCTTCAGGAGAAGATACTTCCCGACGTAGACAAGGAAGACTTCTCTTCGGTTCCCTTGGAACGCCCAAGAGTGAAAGCGGTTTTGATGACATCCTTGAGTTCTGGATATTATGAAAAATTGAGAACCTTGTACTGGGAATACCCAACCACAACGGGAGAGGTCATTGCAGTTCACCAGCCAAGCTACGAAATGTATCAGCAGACTGAGAAGAAGGCTCACAACAGGAAAGCATGGGCAGAAATGTACCTTCTGAGTATGAGCGATGTATTAGTGACCAGTGCATGGTCGACGTTTGGGTATGTGGCTCAAGGACTCGGGGGATCGAAGCCATGGATTCTTTACAAGGCGGAGAACATGACCACGCCCGATCCAGCGTGTCGTAGGGCGATGTCAATGGAGCCTTGCTTTCATGCTCCTCCGTTCTATGATTGCAAGGCAAAGAAAGGAATAGATACTGGTGTAGTTGTTCCACATGTTTTAGTTAGTAAGGCGCCACCTCCTACATTTCCTCGAATAGATGGAGCAGTCAAGACAATCACTCTTCCTGAAGATGTATATGTAAAAAAGTTCTTCCAGAAACATCCAGATTCAAAATACGAAGATGCGATCAAGTTCTGTAGTTTCGATCCTCCTCCAGCCCGAATATTCGGCTTGCGAGTGCTTGAACTGAAGGAACAGGGTGTCAGTGAGGAGGAAGCCATGGCAGTAGCCAATATGGAATACCGGGCAGAGAAAAAGGCGAAAAAGAAGGCTTACTCTCGCTTGAAGCAAATTGCACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCGTATCCAAGCGCTATTAAGGAGATACAAGCCGAGGAAAGGAAATTCGTGCGAGATCGTTTCTTCAACCCCAAGATTAAAGAGATCGCTCAAAGGTTGAAGGAGGAGAGAGCAGCTGAAATGCAGGACAGAATGAGAGGCAGTGGCTGTTCATTGGCAAATCCAAGTCTCTAA 2163 45.03 MTRAFRRRSLCSRPIDRLRFQASADGAPKSGFLRDMKVKEIFTYLLIGLPLVVFVVLVFRNPAADLSLGFAEARALERVVTNGSSESSGSENGFSRLSNRDKLIGGLLIPGFDEGSCLSRYQSSLYRRTLTHRPSPYLLSKLRDYEALHRRCGPHTKLYDEAVEQLRSGSSVRLTECKYVVWMSYSGLGNKILTLASAFLYAVLTDRVLLVDPGKDMADLFCEPFPEKTWLLPNDFPLMDQFSNFNQKSPNCHGYMLKTNTLNESTEALPSYLYLHLVHDYDDHDKLFFCDQEQALLSRVPWLILKTDNYFVPSLFLIPSFEHELSNLFPQKDNVFHHLGQYLFHPSNHVWGLITRYYEAYLSSADEVIGIQVRVFESGSGPFEHIMDQILSCTLQEKILPDVDKEDFSSVPLERPRVKAVLMTSLSSGYYEKLRTLYWEYPTTTGEVIAVHQPSYEMYQQTEKKAHNRKAWAEMYLLSMSDVLVTSAWSTFGYVAQGLGGSKPWILYKAENMTTPDPACRRAMSMEPCFHAPPFYDCKAKKGIDTGVVVPHVLVSKAPPPTFPRIDGAVKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGCSLANPSL 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8413327 8421263 - CmaCh04G016740.1 Cma04g01674 292755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01674 720 Gene3D - 353 515 - -
Cma04g01674 720 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 6 553 - -
Cma04g01674 720 Pfam Xyloglucan fucosyltransferase 98 539 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cma04g01674 720 Gene3D - 174 225 - -
Cma04g01674 720 PANTHER FUCOSYLTRANSFERASE 2-RELATED 6 553 IPR004938 GO:0008107|GO:0016020|GO:0042546
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01674 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101216541 967.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01674 Cma-Chr4:8413327 Cma13g01145 Cma-Chr13:8426670 1.87E-112 dispersed
Cma16g00475 Cma-Chr16:2401539 Cma04g01674 Cma-Chr4:8413327 1.21E-171 transposed
Cma01g00798 Cma-Chr1:4301842 Cma04g01674 Cma-Chr4:8413327 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g967 . . . . . . Bma14g01656 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0939 Cone19ag0933 . . . . . . . . Bda07g01477 . Bpe11g01651 . . . . . . Cma04g01674 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01674 . 100 553 Xyloglucan Fucosyltransferase1 AT1G14080 55.2 5.7e-150 528.5
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 51.9 4.1e-148 522.3
Cma04g01674 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 8.4e-159 557.8
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 3.5e-157 552.4
Cma04g01674 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 1.2e-130 464.2
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 3.5e-189 658.7
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT1G49710 62.9 1.1e-182 637.1
Cma15g00557 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 68.9 2.1e-165 579.3
Cma04g02480 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.1e-161 567.0
Cma04g01674 . 6 553 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 2.7e-174 609.4
Cma01g00798 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 3.3e-164 575.9
Cma16g00475 . 148 641 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 2.8e-139 493.0
Cma13g01145 . 7 253 Xyloglucan Fucosyltransferase1 AT2G03210 53.2 3.0e-88 323.6
Cma04g01674 . 36 553 Xyloglucan Fucosyltransferase1 AT2G03220 62.9 2.1e-192 669.5
Cma01g00798 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 59.2 5.1e-186 648.3
Cma16g00475 . 147 638 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 7.7e-150 528.1
Cma13g01145 . 7 252 Xyloglucan Fucosyltransferase1 AT2G03220 56.5 9.0e-98 355.1
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15350 52.5 6.9e-145 511.5
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15370 51.7 3.4e-139 492.7
Cma04g01674 . 92 553 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 6.7e-143 505.0
Cma01g00798 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 50.8 9.1e-140 494.6
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 3.8e-188 655.2
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT3G19280 64.5 1.1e-184 643.7
Cma04g01674 . 6 553 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 2.7e-174 609.4
Cma01g00798 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 3.3e-164 575.9
Cma16g00475 . 148 641 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 2.8e-139 493.0
Cma13g01145 . 7 253 Xyloglucan Fucosyltransferase1 AT2G03210 53.2 3.0e-88 323.6
Cma04g01674 . 36 553 Xyloglucan Fucosyltransferase1 AT2G03220 62.9 2.1e-192 669.5
Cma01g00798 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 59.2 5.1e-186 648.3
Cma16g00475 . 147 638 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 7.7e-150 528.1
Cma13g01145 . 7 252 Xyloglucan Fucosyltransferase1 AT2G03220 56.5 9.0e-98 355.1
Cma04g01674 . 6 553 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 2.7e-174 609.4
Cma01g00798 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 3.3e-164 575.9
Cma16g00475 . 148 641 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 2.8e-139 493.0
Cma13g01145 . 7 253 Xyloglucan Fucosyltransferase1 AT2G03210 53.2 3.0e-88 323.6
Cma04g01674 . 92 553 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 6.7e-143 505.0
Cma01g00798 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 50.8 9.1e-140 494.6
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15370 51.7 3.4e-139 492.7
Cma04g01674 . 100 553 Xyloglucan Fucosyltransferase1 AT1G14080 55.2 5.7e-150 528.5
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 51.9 4.1e-148 522.3
Cma04g01674 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 8.4e-159 557.8
Cma01g00798 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 3.5e-157 552.4
Cma04g01674 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 1.2e-130 464.2
Cma04g01674 . 101 553 Xyloglucan Fucosyltransferase1 AT2G15350 52.5 6.9e-145 511.5
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 3.8e-188 655.2
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT3G19280 64.5 1.1e-184 643.7
Cma19g00602 . 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 3.5e-189 658.7
Cma16g00355 . 115 625 Xyloglucan Fucosyltransferase1 AT1G49710 62.9 1.1e-182 637.1
Cma15g00557 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 68.9 2.1e-165 579.3
Cma04g02480 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.1e-161 567.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009001 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01674 Cma_Chr04 FPKM 16.604008 16.822813 10.886038 9.896605 16.825052 15.404485 16.406029 9.638129 9.509973 9.85906