Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g01677 | ATGAACTTTAAACCTTCTGGAACTTCCGCCGGTTTGCCGGTGCCGGGGAGCTCCGGAGGCAAGGGAAACTCGTCGTCGTCGACGTCGTCATCGTCATCGGTATCGGGTACGAGCAAGGAGAAGCAAAAGGAGAAAGCGAGAGTGAGTAGAACGTCACAGATACTGTGGCACGCTCACCAAAATGATTCTGCTGCTGTTCGCAAGCTCCTGGAGGAGGATCGCTCCCTTGTCCATGCCAGAGATTATGACAACCGCACTCCTCTCCATGTTGCATCGCTTCATGGCTGGATCGTCGTTGCCAAGTGTTTGATTGAACACGGTGCTGATGTTAATGCCCAAGATCGCTGGAAGAACACACCGCTAGCTGATGCAGAAGGAGCTAAAAAGTATGACATAATTGAGTTATTAAAATCGTATGGTGGCCTTTCCTATGGTCAAAATGGAAGCCATTTTGAACCGAAGCCTGTTCTTCCTCCTCTGCCAAATAAATGTGATTGGGAAGTCGATCCTTCTGAACTGGATTTTTCAAACTCAGCTATTATTGGCAAGTTGCTTGCAGTTCCTGTACTGGAGTCCATTGGTTTACCAATTTTTTTAATCAAAATCTATTCTGCTAGTTACGGCGTCAAGAAATGCAAGTACAGGTCTGAAGGGTCCTTCGGGGAAATTTTGAAGGCCTATTGGCGTGGAACCCCTGTAGCTGTCAAGCGTATTCTTCCATCACTTTCAGATGATAGACTCGTGATTCAGGACTTTCGACATGAGGTTAATCTGTTGGTGAAGCTACGCCACCCTAACATTGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAACCACTTATGTTAATCACTGAATATTTAAGAGGGGGCGATCTTCACCAGTACCTCAAGGACAAAGGTTCCCTCAGTCCTGCTACGGCCATAAATTTTGCACAGGACATCGCCAGGGGAATGACTTATCTCCACAACGAGCCAAATGTTATAATTCACCGTGACCTAAAACCAAGGAACGTTCTTTTAGTCAGTTCTGGTGTGGAGCATCTAAAAGTTGGCGACTTTGGTCTAAGCAAGCTCATCAAGGTTCAGAATTCACATGATGTTTACAAAATGACAGGCGAGACCGGGAGCTACCGGTATATGGCTCCTGAAGTTTTTAAGCACAGAAAATATGATAAGAAAGTGGACGTGTTTTCTTTTGCGATGATATTATACGAGATGCTGGAGGGAGACCCTCCACTGGCAAATTATGAGCCATATGAAGCTGCCAAATATGTGGCTGAAGGTCATAGACCGGTGTTCCGTGCGAAAGGATACCTTTCTGTTCTAAGAGACATTGAAAGTGATGGTATGATTTCATGTGTGAATGCAGTACGCAAAGGCTGTGAAAAAAGATTTTACGGCTTCTTTCACCCTCTACTCAAATGTCCCATTTTCCGTGGAGGAATCTCCACCAGAATGTGGCCTTCTTCAATGTCTCCCATAGCATTTAATCGTTTCTTCTCATGTTTCAATTGTAATTTAGATTTGGTGACGAGGAAAACTCAACTCGTGAATCGCCACCTCCATTCCGCACCCCTCTTCACTTCTGATGTTTTTCCTTTACTCAATGTGGTGTTTAGCGGAGCAATGGAAGTTAGATCTGAGGGTGTACAAGTTAGGTCCGATAAACTCCCAGTTCCTGTAGTTCCGAGGACCCGTTTGCAGGTTTGGTTTGTTCGCGTCTGCTCCAGCATTTTGCTCTGGACATTTTTTGTTCAGCTCGTTGCATTTGGGAAGTTATGGCATCCCCTTTTTATATCCAATATAACCAATCGGATTTCGCAAGTTACTGGGATTCCGCTCTCGCTACACGTCGGAGAGTCCATTCAATCGGCGCCGCTTCTTCCAGCAAGGAACTATTCAAGTAATGGTTATCTTCGAGTGTCCTGCAATGGGGGCTTAAATCAGATGCGTGCTGCGATCTGTGATATGGTGACTGTTGCTCGCCTTTTGAACTTGACGTTGGTTGTTCCAGAACTTGATAAAACATCTTTTTGGGCGGACCCGAGTAATTTTGATGACATATTTAATGTGAAGCATTTTATTGATTCACTGAGAGACGAAGTCCGCATTGTCAGAAGACTACCCAAAAAGTTCAATAGGAAGCATGGATTTATACCATTTTCCATGCCTCCAGTTAGCTGGTCAAATGAAAAATATTATTTAGAACAGATTCTTCCTCTCTTTAAGAAGCACACAGTGTTGCATTTTAATAAAACAGATGCACGCTTGGCAAACAATGGAATCCCAGTTTACTTACAGAAACTCAGGTGTCGAGTCAATTTTCAGGCACTGAAATTCTCCCCTCAGATTGAAACATTGGGTTATAAGTTAATCCGTCTACTTCAAGAAAAGGGACCCATTGTGGTCTTGCATCTGAGATACGAGATGGATATGCTGGCCTTTTCAGGTTGTACACATGGCTGTACGACGAAAGAAGCCGATGAGCTCAAACAAATGAGATATGCATTCCCTTGGTGGAGAGAGAAAGAGATATTGTCTGAAGAGAGGAGATCACAGGGTCAGTGTCCTCTGACTCCAGAGGAAGCGGCACTGACATTACAGGCCTTGGGTTTTAACAAGGAGACACAGTTATATATTGCTGCCGGGGAGATTTATGGTAGTGAACGGAGGCTTGCAACTCTTAGGGAAGCCTTCCCAATGACTGTGAAAAAGGAAGCATTGCTATCCCCAGAAGAATTGAAGTTATTTCGGAATCATTCATCGCAAATGGCAGCTTTAGATTTCATGGTTTCTGTAGCCAGTAACACTTTCATTCCTACCTATGACGGTAACATGGCAAGACTTGTTGAAGGTCACCGGAGATACCTGGGGTTTAAGAGAACAATAACACTGGATAGGAAAAAGCTAGTAGAACTAGTGGATATGCATCAGAATGGTACTCTTTCTTGGGATGACTTTGCAGCTGCTGTAAGATTGGCACATGAGAAAAGGCAAGGTCAGCCACTGCAACGGAGAGCCATTCCAGACAAGCCAAAGGAAGAAGATTACTTTTATGCCAATCCACATGAATGCTTCTGTGAGGGAATGAACTGCCATCATAGTAACTCAAGTGAAGTACTTTAA | 3126 | 44.21 | MNFKPSGTSAGLPVPGSSGGKGNSSSSTSSSSSVSGTSKEKQKEKARVSRTSQILWHAHQNDSAAVRKLLEEDRSLVHARDYDNRTPLHVASLHGWIVVAKCLIEHGADVNAQDRWKNTPLADAEGAKKYDIIELLKSYGGLSYGQNGSHFEPKPVLPPLPNKCDWEVDPSELDFSNSAIIGKLLAVPVLESIGLPIFLIKIYSASYGVKKCKYRSEGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTEKKPLMLITEYLRGGDLHQYLKDKGSLSPATAINFAQDIARGMTYLHNEPNVIIHRDLKPRNVLLVSSGVEHLKVGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPLANYEPYEAAKYVAEGHRPVFRAKGYLSVLRDIESDGMISCVNAVRKGCEKRFYGFFHPLLKCPIFRGGISTRMWPSSMSPIAFNRFFSCFNCNLDLVTRKTQLVNRHLHSAPLFTSDVFPLLNVVFSGAMEVRSEGVQVRSDKLPVPVVPRTRLQVWFVRVCSSILLWTFFVQLVAFGKLWHPLFISNITNRISQVTGIPLSLHVGESIQSAPLLPARNYSSNGYLRVSCNGGLNQMRAAICDMVTVARLLNLTLVVPELDKTSFWADPSNFDDIFNVKHFIDSLRDEVRIVRRLPKKFNRKHGFIPFSMPPVSWSNEKYYLEQILPLFKKHTVLHFNKTDARLANNGIPVYLQKLRCRVNFQALKFSPQIETLGYKLIRLLQEKGPIVVLHLRYEMDMLAFSGCTHGCTTKEADELKQMRYAFPWWREKEILSEERRSQGQCPLTPEEAALTLQALGFNKETQLYIAAGEIYGSERRLATLREAFPMTVKKEALLSPEELKLFRNHSSQMAALDFMVSVASNTFIPTYDGNMARLVEGHRRYLGFKRTITLDRKKLVELVDMHQNGTLSWDDFAAAVRLAHEKRQGQPLQRRAIPDKPKEEDYFYANPHECFCEGMNCHHSNSSEVL | 1041 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8434069 | 8448103 | - | CmaCh04G016770.1 | Cma04g01677 | 292758 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g01677 | 1041 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Cma04g01677 | 1041 | Pfam | Ankyrin repeats (3 copies) | 54 | 114 | IPR002110 | GO:0005515 | |
| Cma04g01677 | 1041 | ProSiteProfiles | Ankyrin repeat profile. | 83 | 115 | IPR002110 | GO:0005515 | |
| Cma04g01677 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 209 | 473 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cma04g01677 | 1041 | CDD | STKc_MAP3K-like | 217 | 431 | - | - | |
| Cma04g01677 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 213 | 435 | IPR011009 | - | |
| Cma04g01677 | 1041 | Gene3D | - | 21 | 149 | IPR036770 | - | |
| Cma04g01677 | 1041 | SMART | serkin_6 | 209 | 491 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cma04g01677 | 1041 | Pfam | GDP-fucose protein O-fucosyltransferase | 638 | 957 | IPR019378 | - | |
| Cma04g01677 | 1041 | SMART | ANK_2a | 83 | 112 | IPR002110 | GO:0005515 | |
| Cma04g01677 | 1041 | PANTHER | OS02G0726500 PROTEIN-RELATED | 560 | 1037 | - | - | |
| Cma04g01677 | 1041 | CDD | O-FucT_plant | 638 | 962 | IPR024709 | - | |
| Cma04g01677 | 1041 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 328 | 340 | IPR008271 | GO:0004672|GO:0006468 | |
| Cma04g01677 | 1041 | ProSiteProfiles | Ankyrin repeat region circular profile. | 83 | 115 | - | - | |
| Cma04g01677 | 1041 | SUPERFAMILY | Ankyrin repeat | 53 | 141 | IPR036770 | - | |
| Cma04g01677 | 1041 | Pfam | Protein tyrosine and serine/threonine kinase | 217 | 431 | IPR001245 | GO:0004672|GO:0006468 | |
| Cma04g01677 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 201 | 456 | - | - | |
| Cma04g01677 | 1041 | PANTHER | RHAMNOGALACTURONAN I RHAMNOSYLTRANSFERASE 1 | 560 | 1037 | - | - | |
| Cma04g01677 | 1041 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01677 | Cma-Chr4:8434069 | Cma13g01055 | Cma-Chr13:8019556 | 0 | dispersed | |
| Cma18g01127 | Cma-Chr18:9148198 | Cma04g01677 | Cma-Chr4:8434069 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 68513 | PF10250 | O-FucT | 5.80E-74 | CL0113 | Cma | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g01677 | K23280 | - | csv:101216054 | 962.6 |