Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01684 ATGGGTGACGATGAAGAAGAACTGCCACCGTCCTCGCCGCAACCGCCGTCCAAACTTAAGCCCCGTCCCTTGAGGCCCACTATTAATCTGCCGCCACGGACCTCCATGGAGTCTCTCTTCAGCGGTGGCCCGGGTTTGGGATTTGGGTTTAGCCCAGGGCCGATGACCCTCGTCTCGAGCTTCTTCTCCGATCCCGATGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCCATGACATCGCCGGTGGCTGTTCCTCCGCTGGAGTCTGAGTTCAAAGGCCCTCCCGGTCTGCTCGATTCTCCTGGGCTTCTTTCGCCTAGTCAAGGGCCTTTTGGAATGACCCATCAGCAGGCTTTGGCTCAGGTTACTATGCAGGCTGCAGAAGCCTGTTCTCATAAGCAAATACAAGCAGCATCTTTGTCTCCATCAGTAGCACCCTATGCGTCGTCCTTACAGCTTTCGACGACCTTTCTGGGCGAGAAGATTAAAGATCAGCCGATGCAACCGTCATTCCCGAATGCTGGACTTGCATCCAAAGAGGTACTGGATATCTCTCAATCAGAGCAGAGAGTGCAATCTTCTTTGTGTACTGTTGGTAGACCTGCTGATGATGGCTACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCGGTGAATTTCCTCGAAGCTACTATAAGTGCACGCACCCGAATTGTCCTGTTAGGAAAAAGGTTGAACGATCTCTTGAAGGACAAGTCACTGAGATTATCTACAAGGGCGAGCACAACCACAAACAACCTCAACCGAACAAGGGGGGAAAGGATGTCGGAAATTCTAATGGATATTCAAATCCTGAGATGTGTTCTCAAGTTCAGAGTAAATTGAACGAGCTGAAAGATGTGTCTTCCATAAAGAATGATCAAGAATCGAGTCATGTTACGCATGAACAGTTGTCAGGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAGACTGGACTGAATCGAAAAGATGACGACGAGCCTGATGCCAAGAGACGGAATACTGAGGTAAGGCTTCCTGAGCCAGCATCTTCTCATAGGACTCTTGCAGAATCCAGAATCATTGTGCAGACTACAAGCGAAGTTGATCTATTGGATGATGGCTACAGGTGGAGAAAGTATGGGCAGAAAATTGTCAAAGGCAACCCTTACCCCAGGAGCTACTATAAATGCACGACGCCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCAACGGACCCGAAAGCTGTCATAACGACGTATGAGGGTAAACACAATCATGACGTTCCAGCTGGTAAAATCAGCAGCCACAGGTCAGTCAACAGTAACGTTCCACAGCTAAAATCACATAATATTTCAAATAAGAACAATGATCATGGGAACTCCCGTCATCAGCATGCTGGAGTTCTACGGTTAAAAGAAGAACAAATAACGTAG 1449 48.24 MGDDEEELPPSSPQPPSKLKPRPLRPTINLPPRTSMESLFSGGPGLGFGFSPGPMTLVSSFFSDPDDCKSFSQLLAGAMTSPVAVPPLESEFKGPPGLLDSPGLLSPSQGPFGMTHQQALAQVTMQAAEACSHKQIQAASLSPSVAPYASSLQLSTTFLGEKIKDQPMQPSFPNAGLASKEVLDISQSEQRVQSSLCTVGRPADDGYNWRKYGQKQVKGGEFPRSYYKCTHPNCPVRKKVERSLEGQVTEIIYKGEHNHKQPQPNKGGKDVGNSNGYSNPEMCSQVQSKLNELKDVSSIKNDQESSHVTHEQLSGTSDGEGGSEIETGLNRKDDDEPDAKRRNTEVRLPEPASSHRTLAESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAGKISSHRSVNSNVPQLKSHNISNKNNDHGNSRHQHAGVLRLKEEQIT 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8477538 8480743 - CmaCh04G016840.1 Cma04g01684 292765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01684 482 MobiDBLite consensus disorder prediction 1 40 - -
Cma04g01684 482 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 20 481 IPR044810 GO:0003700
Cma04g01684 482 MobiDBLite consensus disorder prediction 297 357 - -
Cma04g01684 482 MobiDBLite consensus disorder prediction 267 282 - -
Cma04g01684 482 MobiDBLite consensus disorder prediction 454 482 - -
Cma04g01684 482 MobiDBLite consensus disorder prediction 9 28 - -
Cma04g01684 482 MobiDBLite consensus disorder prediction 254 282 - -
Cma04g01684 482 SMART WRKY_cls 203 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g01684 482 SMART WRKY_cls 374 433 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g01684 482 MobiDBLite consensus disorder prediction 308 323 - -
Cma04g01684 482 MobiDBLite consensus disorder prediction 461 482 - -
Cma04g01684 482 ProSiteProfiles WRKY domain profile. 204 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g01684 482 Gene3D WRKY domain 359 435 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g01684 482 Gene3D WRKY domain 189 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g01684 482 SUPERFAMILY WRKY DNA-binding domain 366 434 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g01684 482 Pfam WRKY DNA -binding domain 375 431 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g01684 482 Pfam WRKY DNA -binding domain 204 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma04g01684 482 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 20 481 - -
Cma04g01684 482 SUPERFAMILY WRKY DNA-binding domain 202 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma04g01684 482 MobiDBLite consensus disorder prediction 325 349 - -
Cma04g01684 482 ProSiteProfiles WRKY domain profile. 369 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01684 Cma-Chr4:8477538 Cma04g02787 Cma-Chr4:18688997 2.65E-127 dispersed
Cma15g00248 Cma-Chr15:1187701 Cma04g01684 Cma-Chr4:8477538 7.35E-136 wgd
Cma18g01123 Cma-Chr18:9120796 Cma04g01684 Cma-Chr4:8477538 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34898 PF03106 WRKY 8.20E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01684 - - cmo:103489160 731.865