Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01684 | ATGGGTGACGATGAAGAAGAACTGCCACCGTCCTCGCCGCAACCGCCGTCCAAACTTAAGCCCCGTCCCTTGAGGCCCACTATTAATCTGCCGCCACGGACCTCCATGGAGTCTCTCTTCAGCGGTGGCCCGGGTTTGGGATTTGGGTTTAGCCCAGGGCCGATGACCCTCGTCTCGAGCTTCTTCTCCGATCCCGATGACTGCAAGTCTTTTTCTCAGCTCCTCGCCGGAGCCATGACATCGCCGGTGGCTGTTCCTCCGCTGGAGTCTGAGTTCAAAGGCCCTCCCGGTCTGCTCGATTCTCCTGGGCTTCTTTCGCCTAGTCAAGGGCCTTTTGGAATGACCCATCAGCAGGCTTTGGCTCAGGTTACTATGCAGGCTGCAGAAGCCTGTTCTCATAAGCAAATACAAGCAGCATCTTTGTCTCCATCAGTAGCACCCTATGCGTCGTCCTTACAGCTTTCGACGACCTTTCTGGGCGAGAAGATTAAAGATCAGCCGATGCAACCGTCATTCCCGAATGCTGGACTTGCATCCAAAGAGGTACTGGATATCTCTCAATCAGAGCAGAGAGTGCAATCTTCTTTGTGTACTGTTGGTAGACCTGCTGATGATGGCTACAATTGGAGAAAATATGGACAGAAACAAGTGAAGGGCGGTGAATTTCCTCGAAGCTACTATAAGTGCACGCACCCGAATTGTCCTGTTAGGAAAAAGGTTGAACGATCTCTTGAAGGACAAGTCACTGAGATTATCTACAAGGGCGAGCACAACCACAAACAACCTCAACCGAACAAGGGGGGAAAGGATGTCGGAAATTCTAATGGATATTCAAATCCTGAGATGTGTTCTCAAGTTCAGAGTAAATTGAACGAGCTGAAAGATGTGTCTTCCATAAAGAATGATCAAGAATCGAGTCATGTTACGCATGAACAGTTGTCAGGTACTAGTGATGGTGAGGGAGGGAGTGAGATAGAGACTGGACTGAATCGAAAAGATGACGACGAGCCTGATGCCAAGAGACGGAATACTGAGGTAAGGCTTCCTGAGCCAGCATCTTCTCATAGGACTCTTGCAGAATCCAGAATCATTGTGCAGACTACAAGCGAAGTTGATCTATTGGATGATGGCTACAGGTGGAGAAAGTATGGGCAGAAAATTGTCAAAGGCAACCCTTACCCCAGGAGCTACTATAAATGCACGACGCCAGGATGCAATGTTCGTAAACATGTAGAGAGAGCTTCAACGGACCCGAAAGCTGTCATAACGACGTATGAGGGTAAACACAATCATGACGTTCCAGCTGGTAAAATCAGCAGCCACAGGTCAGTCAACAGTAACGTTCCACAGCTAAAATCACATAATATTTCAAATAAGAACAATGATCATGGGAACTCCCGTCATCAGCATGCTGGAGTTCTACGGTTAAAAGAAGAACAAATAACGTAG | 1449 | 48.24 | MGDDEEELPPSSPQPPSKLKPRPLRPTINLPPRTSMESLFSGGPGLGFGFSPGPMTLVSSFFSDPDDCKSFSQLLAGAMTSPVAVPPLESEFKGPPGLLDSPGLLSPSQGPFGMTHQQALAQVTMQAAEACSHKQIQAASLSPSVAPYASSLQLSTTFLGEKIKDQPMQPSFPNAGLASKEVLDISQSEQRVQSSLCTVGRPADDGYNWRKYGQKQVKGGEFPRSYYKCTHPNCPVRKKVERSLEGQVTEIIYKGEHNHKQPQPNKGGKDVGNSNGYSNPEMCSQVQSKLNELKDVSSIKNDQESSHVTHEQLSGTSDGEGGSEIETGLNRKDDDEPDAKRRNTEVRLPEPASSHRTLAESRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAGKISSHRSVNSNVPQLKSHNISNKNNDHGNSRHQHAGVLRLKEEQIT | 482 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8477538 | 8480743 | - | CmaCh04G016840.1 | Cma04g01684 | 292765 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01684 | 482 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Cma04g01684 | 482 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 20 | 481 | IPR044810 | GO:0003700 | |
Cma04g01684 | 482 | MobiDBLite | consensus disorder prediction | 297 | 357 | - | - | |
Cma04g01684 | 482 | MobiDBLite | consensus disorder prediction | 267 | 282 | - | - | |
Cma04g01684 | 482 | MobiDBLite | consensus disorder prediction | 454 | 482 | - | - | |
Cma04g01684 | 482 | MobiDBLite | consensus disorder prediction | 9 | 28 | - | - | |
Cma04g01684 | 482 | MobiDBLite | consensus disorder prediction | 254 | 282 | - | - | |
Cma04g01684 | 482 | SMART | WRKY_cls | 203 | 261 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g01684 | 482 | SMART | WRKY_cls | 374 | 433 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g01684 | 482 | MobiDBLite | consensus disorder prediction | 308 | 323 | - | - | |
Cma04g01684 | 482 | MobiDBLite | consensus disorder prediction | 461 | 482 | - | - | |
Cma04g01684 | 482 | ProSiteProfiles | WRKY domain profile. | 204 | 262 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g01684 | 482 | Gene3D | WRKY domain | 359 | 435 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g01684 | 482 | Gene3D | WRKY domain | 189 | 263 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g01684 | 482 | SUPERFAMILY | WRKY DNA-binding domain | 366 | 434 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g01684 | 482 | Pfam | WRKY DNA -binding domain | 375 | 431 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g01684 | 482 | Pfam | WRKY DNA -binding domain | 204 | 260 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g01684 | 482 | PANTHER | WRKY TRANSCRIPTION FACTOR 58-RELATED | 20 | 481 | - | - | |
Cma04g01684 | 482 | SUPERFAMILY | WRKY DNA-binding domain | 202 | 262 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma04g01684 | 482 | MobiDBLite | consensus disorder prediction | 325 | 349 | - | - | |
Cma04g01684 | 482 | ProSiteProfiles | WRKY domain profile. | 369 | 434 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01684 | Cma-Chr4:8477538 | Cma04g02787 | Cma-Chr4:18688997 | 2.65E-127 | dispersed | |
Cma15g00248 | Cma-Chr15:1187701 | Cma04g01684 | Cma-Chr4:8477538 | 7.35E-136 | wgd | |
Cma18g01123 | Cma-Chr18:9120796 | Cma04g01684 | Cma-Chr4:8477538 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34898 | PF03106 | WRKY | 8.20E-26 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01684 | - | - | cmo:103489160 | 731.865 |