Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01685 ATGTCTGACGAGGAGCACCACTTCGAGTCGAAGGCCGACGCCGGAGCTTCCAAGACTTATCCTCAGCAGGCTGGAACCATCCGTAAGAATGGTTACATTGTCATCAAGGGCAGGCCTTGCAAGGTTGTTGAAGTTTCAACCTCTAAGACTGGAAAGCACGGACATGCTAAATGTCACTTTGTTGCCATTGACATTTTCACCTCTAAAAAGCTTGAAGATATCGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTCAGTCGCACTGACTATCAGCTCATTGATATCTCTGAGGATGGATTTATTAGCCTGCTGACGGACAGTGGTAACACCAAGGATGACCTGAGGCTTCCAAACGATGAGAGTCTGATGACCCAGATCAAGGATGGATTTGCTGAGGGGAAGGATCTGATTGTGACTGTCATGTCTTCAATGGGAGAGGAGCAAATCTGCGCTCTCAAGGACATCGGCCCAAAATAG 480 47.71 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVSRTDYQLIDISEDGFISLLTDSGNTKDDLRLPNDESLMTQIKDGFAEGKDLIVTVMSSMGEEQICALKDIGPK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8481658 8484022 - CmaCh04G016850.1 Cma04g01685 292766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01685 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma04g01685 159 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma04g01685 159 CDD S1_eIF5A 86 156 - -
Cma04g01685 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Cma04g01685 159 Gene3D - 86 158 IPR012340 -
Cma04g01685 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma04g01685 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Cma04g01685 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Cma04g01685 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma04g01685 159 Gene3D - 1 85 IPR014722 -
Cma04g01685 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Cma04g01685 159 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Cma04g01685 159 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01685 Cma-Chr4:8481658 Cma09g00411 Cma-Chr9:1742982 1.55E-108 dispersed
Cma18g01122 Cma-Chr18:9117309 Cma04g01685 Cma-Chr4:8481658 4.97E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01685 K03263 K02180 csv:101214693 313.923