Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01687 ATGGAGAAGGCCTTGACCAGAGTGAGCAGCTTAAAGGTCGGGAGCTTGTGGATTTCAAAGAAAGCCAAGGAGGAACTCGCTAATATCACCGACGATTTCCAAACTTTCTCAAATACCGTGGAAGAGAAGGCAAAGTGGATTTTCAACAAGCTAAAAGGAAAGCCATTGAAGAGCCTGCCGGAATTACTCCGTGAGTACAACTTACCGCCCGGCCTCTTTCCTCAGAACATAATCAGCTACGAATTTGATGAATCCAGGTCCAGGCTGATTGTGTACTTACCATCCGTTTGTGAGATAAGCTTCAAGGATTCTTCTGTGGTCAGATATGCAACACGGGTGAAAGGAACTCTTCAGAGAGGGAAGCTAACAAGCATTGAAGGAATGAAGACAAAAGTCCTAGTGTGGGTGAAAGTGACAAGCGTGATGGTTGAGGGCTACAAATCTGATAAGGTCTGGTTCACAGCAGGAGTGAAGAAGTCGAGACCGAAAGATGCGTACGAAAAGCCCCGTGACGCCGTTAGGGTAGAAGAATTCTGA 537 46.37 MEKALTRVSSLKVGSLWISKKAKEELANITDDFQTFSNTVEEKAKWIFNKLKGKPLKSLPELLREYNLPPGLFPQNIISYEFDESRSRLIVYLPSVCEISFKDSSVVRYATRVKGTLQRGKLTSIEGMKTKVLVWVKVTSVMVEGYKSDKVWFTAGVKKSRPKDAYEKPRDAVRVEEF 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8486944 8489128 - CmaCh04G016870.1 Cma04g01687 292768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01687 178 Gene3D - 37 178 IPR036758 -
Cma04g01687 178 PANTHER T31J12.3 PROTEIN-RELATED 3 178 IPR007493 -
Cma04g01687 178 Pfam Protein of unknown function, DUF538 61 167 IPR007493 -
Cma04g01687 178 SUPERFAMILY At5g01610-like 11 177 IPR036758 -
Cma04g01687 178 PANTHER - 3 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01687 - - - csv:101214933 325.479
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01687 Cma18g01121 CCT
Cma04g01687 Cma18g01121 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01687 Cma-Chr4:8486944 Cma08g00266 Cma-Chr8:1522867 4.82E-15 dispersed
Cma03g00328 Cma-Chr3:4062729 Cma04g01687 Cma-Chr4:8486944 9.68E-57 transposed
Cma01g00481 Cma-Chr1:2437137 Cma04g01687 Cma-Chr4:8486944 3.24E-09 wgd
Cma18g01121 Cma-Chr18:9105306 Cma04g01687 Cma-Chr4:8486944 6.69E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g988 Blo01g00443 . Bda01g02137 . . . . . Cmo04g01768 Cmo18g01142 . Cma18g01121 . Car18g01033 Sed06g1493 Cpe09g00207 Cpe01g01493 Bhi07g01520 Tan04g1033 Cmetu10g0314 Lac13g0354 Hepe10g1778 . . Cla05g02411 Cam05g2589 Cec05g2621 Cco05g2660 Clacu05g2590 Cmu05g2444 . . . . . Lsi04g00383 Csa05g02493 Chy10g01041 Cme10g00378 . . . . . Bpe02g02326 Bma01g00113 . . . . Cma04g01687 . Car04g01724 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002962 1 2 1 1 1 2 1 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 1 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01687 Cma_Chr04 FPKM 15.456922 22.909908 28.783747 27.938814 49.870934 50.108532 54.890953 35.244335 35.243599 39.490677