Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g01688 | ATGGGAACAAAGGTGCAGTATGAACGTTATTTGCCAGGTTATCACTCAATGAGGGATCTAAATGAAGATTCTCATGGTTGTAGCTGGCCTTTATATTACAGTGAAAAATCATGTCAGAGCAGCCCGTATTATAATGGAAATTTGTCAAGTGCTACCTCCGATGCATATCTAGGTTGTGATAGAGATGCTGTGAAGAGGACAATGCTTCAGCACGAAGCCATATTCAAGAATCAAGTTTGCGAGCTGCATCGGTTATATGTAAAACAGAGAGAGTTAATGAATGATATTAAAAGATCCGAACACAGACACCCGATGCCGGTAGACATATCATTCTCATCTAGTCCTCTAGCATCTCAAAGTACTCCTGATGGTGCAAGAAAATGGCATCTCCCAAGCTTTCCTCATGCCATTTCTTCTAGTGGCGGACCGTATGCACCTAGTGTTGAAGATGTAAAATCATCTTTAAGTTCTTTGAAAAAGAATAATAGAAACGATGGTCTCTTACTATCCCAAAATGGAACGAGTTCAAAAGACTGTGAGGTACTAGAATCTAAACCCTCAAAGGTTAGGAGGAAAACATTTGATCTTCAACTTCCAGCAGACGAGTACATTGATAGCGAAGAGGGGGAGGTATTTCATGATGAAAAAGTGTCCCCCATGTTGGGTTTCCATTCAAACGGTAACAAGAAATTTGAGATTCAGAGTTGTGTGACGGCAAATCCCAGTGGAAAAAGTGATGTTAAAGGTGCTGCTTTGAGATCTGACTCGTGTTTATGGAACAGATATGGTTTGGCCGATTTAAACGAGCCCATTCAGGTTGAAGAGGCAAATGGGTCCAATTTTTTTGATCTTCCTAGTGCTCGTGGCTCCAGCAATTGGGAGGCTCAAGGCCCCATTGTATCATCTAGGAAGCAAGAAAAGTTTCTGAGCTCCAGTAATGAAGGTGGACATGCAACAAATAGAAGAGCGGCATTCCCTAACATCTTTGAAGCAGGACGTAGTATGGAAAGCGAGAAACCCGTCACTCGTGGTCAGATGGAAAATTTTCATGTATCTTCTAATCCTATGCAAGTTCCACTAAACAAGTTTCATGAACCTCCAGTTTTCTATGTCAATGATAGAAGCAAGGTTCAACAGGAGTTGGACAGGCCAGTTAGTGATTTGCAATTATCCAAAAGAAGTTATGAAATGTCTAATACTGGGGATCCTGGTTATCTTTTAGCTTCGCAGACATCTCGTACACATCCTATCGCTCCTTCTTTGGACGTGGGTAAGTCTTGGGCTCACTCTGGTTCATCTTGGGAAAAGCCAAATGGCAACGGCTCCCAAAAGTCGACATCGGTTCATACACAACCGTGTTTCAAATTGTCTGCTGCTGTGCACAAGAGTTTTCCTTCATCAGCCCAGAACAATAGAAGTTTTGGAGATAGATGGCATTTGAGTAGTGACTCTAGATCAAACCCTGGGTCTGGTTGTGATACTCCTTACCAGAATGGACTCTATCTCGGGTCTACGTCTGGCTCCAATGGAGGAGTTCTCGCCTCTACCGTAAGGCACGACCATGCTGCAAACTATTACAAGGGCTCTGGTTGTGTGGGCACGAATTCTCCGAAAGACATTAACTTGAATGTAATGCTCTCAAACAGTTTATCTAATGAGGCAGTTCAACAACCCAACTACCGGACCAGAGAGGCAGAACCAAACAATGAGGACCATCATAATGTATTACCATGGTCAAGGGCTGTACCTGCTAGTAAGAATGAAACGATCAATTCAAGCAGATTATCAATGACTGCAGAGCTTAATTTTGGGCTCTCTCCAAAGAACCAGTTTTCCAAAAGAAACGAAGCTGAAAATGGCAGTAAAGTTGAATGTTGTCCGAACATTGAGTCTAATTCACGTTGTAGTAACATTGAGCCCAGAACGTCGGAACACGGTGAATGTCGGAGTAACAGAAAACTTCTTGGGTTTCCCTTTTTCGAAGGGCCATGCATTTCTAAGAATGAGTCATTTTCTGTTACATCCCCATCGGCATCTCTTCCTAATCCATCTGAGAATGAAGTGGACGATAAACGGAAAACTAGAGTACTTGATATCAATTTGCCTTGTGATCCTTCAGTTTTTGATTCGGATAACGCTACTACCGGAGCTCTGGCTGTCGAGAATAGAAAGGACACAAAGATCTCTACTGTTAGAGTTCATATTGATTTGAACTCATGTGTCAGTGATGAAGAAGCTTCTATGAGACCTCTACCCTTGGTTTCTTCAAGTGCCAAGGAAAAGGTCACGGTAGAGATAGATTTAGAAGCCCCGGCACTGCCCGAGACTGAAGACGACATAATTGCAGAGGAAGAATCTGTAGAAAAACATCACGAACGGCGATCACAATCTCCTCAGCATAAGGCTGTGGACATACAGGATGATCTTATGGCTGTAGCAGCAGAAGCAATAGTTGTCATCTCTTCTTGTGGTCATTCCTGTCATTTGGATGATACTGTTAGCAACGCGTTGGAAGATTCTTCGAGCGACCCCCTAAATTGGTTTGCCGAGGTAGTTTCTACACACGGAGATGATAAGCACACCAAGTCTGACACTGTATTTAGAGACAAAGAAGGCAAGGATAATGGTGAATCCTCTTTGAGAGGGACTGATTACTTCGAATACATGACTTTGAGGCTGGCGGAGGTCGGTGAAGAAGACTACATGCCGAAGCCCTTGGTTCCAGAAAATATGGAAATTGAAGAATCTGGAACCAATTTGTTGCAAAATCGATCCCGAAAGGGCCAGACGAGGAGAGGTAGGCAGCGAAGGGACTTCCAGAAGGATATCCTTCCAGGCCTTTCTTCTCTATCAAGGCATGAGGTTACAGAAGATCTTCAGACGTTTGGTGGCCTAATGCGAGCAACAGGCCACTCCTGGCATTCGGGAGTGACGAGGAGGAACTCTACTAGAAACGGTTGCGGTAGAGGAAGACGACGATCAGCAATCAGTCCCCCACCAGCTGTGCATTCAGAATGTAATCAGCTGATACAGCAACTAAGTAGCATTGAAATGGTTCTGGAGGATGGAAGCCTGAGTGGTTGGGGCAAGACAACTAGACGGCCCCGTCGACAGAGATGCCCGGCTGGAACGCTCCGCCTGTCCCTTTAA | 3150 | 44.13 | MGTKVQYERYLPGYHSMRDLNEDSHGCSWPLYYSEKSCQSSPYYNGNLSSATSDAYLGCDRDAVKRTMLQHEAIFKNQVCELHRLYVKQRELMNDIKRSEHRHPMPVDISFSSSPLASQSTPDGARKWHLPSFPHAISSSGGPYAPSVEDVKSSLSSLKKNNRNDGLLLSQNGTSSKDCEVLESKPSKVRRKTFDLQLPADEYIDSEEGEVFHDEKVSPMLGFHSNGNKKFEIQSCVTANPSGKSDVKGAALRSDSCLWNRYGLADLNEPIQVEEANGSNFFDLPSARGSSNWEAQGPIVSSRKQEKFLSSSNEGGHATNRRAAFPNIFEAGRSMESEKPVTRGQMENFHVSSNPMQVPLNKFHEPPVFYVNDRSKVQQELDRPVSDLQLSKRSYEMSNTGDPGYLLASQTSRTHPIAPSLDVGKSWAHSGSSWEKPNGNGSQKSTSVHTQPCFKLSAAVHKSFPSSAQNNRSFGDRWHLSSDSRSNPGSGCDTPYQNGLYLGSTSGSNGGVLASTVRHDHAANYYKGSGCVGTNSPKDINLNVMLSNSLSNEAVQQPNYRTREAEPNNEDHHNVLPWSRAVPASKNETINSSRLSMTAELNFGLSPKNQFSKRNEAENGSKVECCPNIESNSRCSNIEPRTSEHGECRSNRKLLGFPFFEGPCISKNESFSVTSPSASLPNPSENEVDDKRKTRVLDINLPCDPSVFDSDNATTGALAVENRKDTKISTVRVHIDLNSCVSDEEASMRPLPLVSSSAKEKVTVEIDLEAPALPETEDDIIAEEESVEKHHERRSQSPQHKAVDIQDDLMAVAAEAIVVISSCGHSCHLDDTVSNALEDSSSDPLNWFAEVVSTHGDDKHTKSDTVFRDKEGKDNGESSLRGTDYFEYMTLRLAEVGEEDYMPKPLVPENMEIEESGTNLLQNRSRKGQTRRGRQRRDFQKDILPGLSSLSRHEVTEDLQTFGGLMRATGHSWHSGVTRRNSTRNGCGRGRRRSAISPPPAVHSECNQLIQQLSSIEMVLEDGSLSGWGKTTRRPRRQRCPAGTLRLSL | 1049 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 8494575 | 8500550 | + | CmaCh04G016880.1 | Cma04g01688 | 292769 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g01688 | 1049 | MobiDBLite | consensus disorder prediction | 1027 | 1049 | - | - | |
| Cma04g01688 | 1049 | MobiDBLite | consensus disorder prediction | 553 | 575 | - | - | |
| Cma04g01688 | 1049 | MobiDBLite | consensus disorder prediction | 915 | 937 | - | - | |
| Cma04g01688 | 1049 | MobiDBLite | consensus disorder prediction | 431 | 450 | - | - | |
| Cma04g01688 | 1049 | MobiDBLite | consensus disorder prediction | 972 | 1002 | - | - | |
| Cma04g01688 | 1049 | MobiDBLite | consensus disorder prediction | 465 | 492 | - | - | |
| Cma04g01688 | 1049 | Pfam | Plant protein of unknown function (DUF863) | 147 | 1041 | IPR008581 | - | |
| Cma04g01688 | 1049 | PANTHER | TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED | 1 | 1044 | - | - | |
| Cma04g01688 | 1049 | PANTHER | - | 1 | 1044 | - | - | |
| Cma04g01688 | 1049 | MobiDBLite | consensus disorder prediction | 856 | 881 | - | - | |
| Cma04g01688 | 1049 | MobiDBLite | consensus disorder prediction | 416 | 450 | - | - | |
| Cma04g01688 | 1049 | MobiDBLite | consensus disorder prediction | 856 | 880 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma04g01688 | Cma18g01120 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01688 | Cma-Chr4:8494575 | Cma05g00438 | Cma-Chr5:1998664 | 2.77E-159 | dispersed | |
| Cma02g01551 | Cma-Chr2:8804128 | Cma04g01688 | Cma-Chr4:8494575 | 1.14E-06 | transposed | |
| Cma01g00808 | Cma-Chr1:4352380 | Cma04g01688 | Cma-Chr4:8494575 | 5.61E-11 | wgd | |
| Cma13g01091 | Cma-Chr13:8217615 | Cma04g01688 | Cma-Chr4:8494575 | 3.30E-14 | wgd | |
| Cma18g01120 | Cma-Chr18:9092224 | Cma04g01688 | Cma-Chr4:8494575 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g01688 | - | - | bhj:120080916 | 1749.18 |