Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01688 ATGGGAACAAAGGTGCAGTATGAACGTTATTTGCCAGGTTATCACTCAATGAGGGATCTAAATGAAGATTCTCATGGTTGTAGCTGGCCTTTATATTACAGTGAAAAATCATGTCAGAGCAGCCCGTATTATAATGGAAATTTGTCAAGTGCTACCTCCGATGCATATCTAGGTTGTGATAGAGATGCTGTGAAGAGGACAATGCTTCAGCACGAAGCCATATTCAAGAATCAAGTTTGCGAGCTGCATCGGTTATATGTAAAACAGAGAGAGTTAATGAATGATATTAAAAGATCCGAACACAGACACCCGATGCCGGTAGACATATCATTCTCATCTAGTCCTCTAGCATCTCAAAGTACTCCTGATGGTGCAAGAAAATGGCATCTCCCAAGCTTTCCTCATGCCATTTCTTCTAGTGGCGGACCGTATGCACCTAGTGTTGAAGATGTAAAATCATCTTTAAGTTCTTTGAAAAAGAATAATAGAAACGATGGTCTCTTACTATCCCAAAATGGAACGAGTTCAAAAGACTGTGAGGTACTAGAATCTAAACCCTCAAAGGTTAGGAGGAAAACATTTGATCTTCAACTTCCAGCAGACGAGTACATTGATAGCGAAGAGGGGGAGGTATTTCATGATGAAAAAGTGTCCCCCATGTTGGGTTTCCATTCAAACGGTAACAAGAAATTTGAGATTCAGAGTTGTGTGACGGCAAATCCCAGTGGAAAAAGTGATGTTAAAGGTGCTGCTTTGAGATCTGACTCGTGTTTATGGAACAGATATGGTTTGGCCGATTTAAACGAGCCCATTCAGGTTGAAGAGGCAAATGGGTCCAATTTTTTTGATCTTCCTAGTGCTCGTGGCTCCAGCAATTGGGAGGCTCAAGGCCCCATTGTATCATCTAGGAAGCAAGAAAAGTTTCTGAGCTCCAGTAATGAAGGTGGACATGCAACAAATAGAAGAGCGGCATTCCCTAACATCTTTGAAGCAGGACGTAGTATGGAAAGCGAGAAACCCGTCACTCGTGGTCAGATGGAAAATTTTCATGTATCTTCTAATCCTATGCAAGTTCCACTAAACAAGTTTCATGAACCTCCAGTTTTCTATGTCAATGATAGAAGCAAGGTTCAACAGGAGTTGGACAGGCCAGTTAGTGATTTGCAATTATCCAAAAGAAGTTATGAAATGTCTAATACTGGGGATCCTGGTTATCTTTTAGCTTCGCAGACATCTCGTACACATCCTATCGCTCCTTCTTTGGACGTGGGTAAGTCTTGGGCTCACTCTGGTTCATCTTGGGAAAAGCCAAATGGCAACGGCTCCCAAAAGTCGACATCGGTTCATACACAACCGTGTTTCAAATTGTCTGCTGCTGTGCACAAGAGTTTTCCTTCATCAGCCCAGAACAATAGAAGTTTTGGAGATAGATGGCATTTGAGTAGTGACTCTAGATCAAACCCTGGGTCTGGTTGTGATACTCCTTACCAGAATGGACTCTATCTCGGGTCTACGTCTGGCTCCAATGGAGGAGTTCTCGCCTCTACCGTAAGGCACGACCATGCTGCAAACTATTACAAGGGCTCTGGTTGTGTGGGCACGAATTCTCCGAAAGACATTAACTTGAATGTAATGCTCTCAAACAGTTTATCTAATGAGGCAGTTCAACAACCCAACTACCGGACCAGAGAGGCAGAACCAAACAATGAGGACCATCATAATGTATTACCATGGTCAAGGGCTGTACCTGCTAGTAAGAATGAAACGATCAATTCAAGCAGATTATCAATGACTGCAGAGCTTAATTTTGGGCTCTCTCCAAAGAACCAGTTTTCCAAAAGAAACGAAGCTGAAAATGGCAGTAAAGTTGAATGTTGTCCGAACATTGAGTCTAATTCACGTTGTAGTAACATTGAGCCCAGAACGTCGGAACACGGTGAATGTCGGAGTAACAGAAAACTTCTTGGGTTTCCCTTTTTCGAAGGGCCATGCATTTCTAAGAATGAGTCATTTTCTGTTACATCCCCATCGGCATCTCTTCCTAATCCATCTGAGAATGAAGTGGACGATAAACGGAAAACTAGAGTACTTGATATCAATTTGCCTTGTGATCCTTCAGTTTTTGATTCGGATAACGCTACTACCGGAGCTCTGGCTGTCGAGAATAGAAAGGACACAAAGATCTCTACTGTTAGAGTTCATATTGATTTGAACTCATGTGTCAGTGATGAAGAAGCTTCTATGAGACCTCTACCCTTGGTTTCTTCAAGTGCCAAGGAAAAGGTCACGGTAGAGATAGATTTAGAAGCCCCGGCACTGCCCGAGACTGAAGACGACATAATTGCAGAGGAAGAATCTGTAGAAAAACATCACGAACGGCGATCACAATCTCCTCAGCATAAGGCTGTGGACATACAGGATGATCTTATGGCTGTAGCAGCAGAAGCAATAGTTGTCATCTCTTCTTGTGGTCATTCCTGTCATTTGGATGATACTGTTAGCAACGCGTTGGAAGATTCTTCGAGCGACCCCCTAAATTGGTTTGCCGAGGTAGTTTCTACACACGGAGATGATAAGCACACCAAGTCTGACACTGTATTTAGAGACAAAGAAGGCAAGGATAATGGTGAATCCTCTTTGAGAGGGACTGATTACTTCGAATACATGACTTTGAGGCTGGCGGAGGTCGGTGAAGAAGACTACATGCCGAAGCCCTTGGTTCCAGAAAATATGGAAATTGAAGAATCTGGAACCAATTTGTTGCAAAATCGATCCCGAAAGGGCCAGACGAGGAGAGGTAGGCAGCGAAGGGACTTCCAGAAGGATATCCTTCCAGGCCTTTCTTCTCTATCAAGGCATGAGGTTACAGAAGATCTTCAGACGTTTGGTGGCCTAATGCGAGCAACAGGCCACTCCTGGCATTCGGGAGTGACGAGGAGGAACTCTACTAGAAACGGTTGCGGTAGAGGAAGACGACGATCAGCAATCAGTCCCCCACCAGCTGTGCATTCAGAATGTAATCAGCTGATACAGCAACTAAGTAGCATTGAAATGGTTCTGGAGGATGGAAGCCTGAGTGGTTGGGGCAAGACAACTAGACGGCCCCGTCGACAGAGATGCCCGGCTGGAACGCTCCGCCTGTCCCTTTAA 3150 44.13 MGTKVQYERYLPGYHSMRDLNEDSHGCSWPLYYSEKSCQSSPYYNGNLSSATSDAYLGCDRDAVKRTMLQHEAIFKNQVCELHRLYVKQRELMNDIKRSEHRHPMPVDISFSSSPLASQSTPDGARKWHLPSFPHAISSSGGPYAPSVEDVKSSLSSLKKNNRNDGLLLSQNGTSSKDCEVLESKPSKVRRKTFDLQLPADEYIDSEEGEVFHDEKVSPMLGFHSNGNKKFEIQSCVTANPSGKSDVKGAALRSDSCLWNRYGLADLNEPIQVEEANGSNFFDLPSARGSSNWEAQGPIVSSRKQEKFLSSSNEGGHATNRRAAFPNIFEAGRSMESEKPVTRGQMENFHVSSNPMQVPLNKFHEPPVFYVNDRSKVQQELDRPVSDLQLSKRSYEMSNTGDPGYLLASQTSRTHPIAPSLDVGKSWAHSGSSWEKPNGNGSQKSTSVHTQPCFKLSAAVHKSFPSSAQNNRSFGDRWHLSSDSRSNPGSGCDTPYQNGLYLGSTSGSNGGVLASTVRHDHAANYYKGSGCVGTNSPKDINLNVMLSNSLSNEAVQQPNYRTREAEPNNEDHHNVLPWSRAVPASKNETINSSRLSMTAELNFGLSPKNQFSKRNEAENGSKVECCPNIESNSRCSNIEPRTSEHGECRSNRKLLGFPFFEGPCISKNESFSVTSPSASLPNPSENEVDDKRKTRVLDINLPCDPSVFDSDNATTGALAVENRKDTKISTVRVHIDLNSCVSDEEASMRPLPLVSSSAKEKVTVEIDLEAPALPETEDDIIAEEESVEKHHERRSQSPQHKAVDIQDDLMAVAAEAIVVISSCGHSCHLDDTVSNALEDSSSDPLNWFAEVVSTHGDDKHTKSDTVFRDKEGKDNGESSLRGTDYFEYMTLRLAEVGEEDYMPKPLVPENMEIEESGTNLLQNRSRKGQTRRGRQRRDFQKDILPGLSSLSRHEVTEDLQTFGGLMRATGHSWHSGVTRRNSTRNGCGRGRRRSAISPPPAVHSECNQLIQQLSSIEMVLEDGSLSGWGKTTRRPRRQRCPAGTLRLSL 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8494575 8500550 + CmaCh04G016880.1 Cma04g01688 292769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01688 1049 MobiDBLite consensus disorder prediction 1027 1049 - -
Cma04g01688 1049 MobiDBLite consensus disorder prediction 553 575 - -
Cma04g01688 1049 MobiDBLite consensus disorder prediction 915 937 - -
Cma04g01688 1049 MobiDBLite consensus disorder prediction 431 450 - -
Cma04g01688 1049 MobiDBLite consensus disorder prediction 972 1002 - -
Cma04g01688 1049 MobiDBLite consensus disorder prediction 465 492 - -
Cma04g01688 1049 Pfam Plant protein of unknown function (DUF863) 147 1041 IPR008581 -
Cma04g01688 1049 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED 1 1044 - -
Cma04g01688 1049 PANTHER - 1 1044 - -
Cma04g01688 1049 MobiDBLite consensus disorder prediction 856 881 - -
Cma04g01688 1049 MobiDBLite consensus disorder prediction 416 450 - -
Cma04g01688 1049 MobiDBLite consensus disorder prediction 856 880 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01688 - - - bhj:120080916 1749.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01688 Cma18g01120 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01688 Cma-Chr4:8494575 Cma05g00438 Cma-Chr5:1998664 2.77E-159 dispersed
Cma02g01551 Cma-Chr2:8804128 Cma04g01688 Cma-Chr4:8494575 1.14E-06 transposed
Cma01g00808 Cma-Chr1:4352380 Cma04g01688 Cma-Chr4:8494575 5.61E-11 wgd
Cma13g01091 Cma-Chr13:8217615 Cma04g01688 Cma-Chr4:8494575 3.30E-14 wgd
Cma18g01120 Cma-Chr18:9092224 Cma04g01688 Cma-Chr4:8494575 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g80 Blo01g00444 . Bda01g02136 . . Bpe10g00891 . Bma15g00139 Cmo04g01769 Cmo18g01141 . Cma18g01120 . Car18g01032 Sed06g1491 Cpe09g00208 Cpe01g01494 Bhi07g01518 Tan04g1031 Cmetu10g0795 Lac13g0357 Hepe10g1779 . . Cla05g02409 Cam05g2586 Cec05g2618 Cco05g2658 Clacu05g2588 Cmu05g2442 Cre05g2559 . . Cone6ag0549 Cone9ag0559 Lsi04g00380 Csa05g02495 Chy10g01043 Cme10g00377 . Blo11g00790 . . . Bpe02g02325 Bma01g00114 . . . . Cma04g01688 . Car04g01725 . . Cpe07g00079 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001421 1 6 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 8 3 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01688 Cma_Chr04 FPKM 5.56379 7.268835 9.136252 9.425745 4.327524 4.025507 3.838444 12.223739 11.04553 11.741258