Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01691 ATGGCGTCCAAAGCTTTCCTCTTCGCTCTCATTTGCTTCATTTCCTTCTCCTCTTCTATCTTAGCAGAATTTGTTAAAGTTTCGGTGAAAGGAGTGACCACCATTGCTGAAACCGACAATGATTTCATCTGTGCTACTCTGGATTGGTGGCCTTCTGATAAATGTGATTACGGCCAATGCCCCTGGGGAAAAGCTGGCCTTCTCAATTTGGATCTGCAGAACATTATCTTGTCTAAAGCAATCAAGGAGTTCAATCCTCTGAGAATCCGAGTTGGAGGGTCACTTCAAGATCAAATCATTTACAGAGTTGGGAACTCAGTCAAAAAGTGCCCTCAGATGAAGAAACAAGACGATGGATTGTTCGGATTCAGCAAAGGTTGTTTCCCCATGGAAAGATGGGACGAACTTAGCGACATGTTCAACAAAACCTCGGCTCGGATTACGTTTGGTTTGAACGCTCTAATCGGTAAAAAGCCATCCAACGATGGAAAAGGCACATGGGTTGGTGATTGGGATCCACGTAATGCTCGAGATTTCATTCGATACACTGCCTCTAAAGGCTACCAAATCGATTCTTATGAACTGGGAAATGAGCTTTCTGGTAGTGGGGTTTCTGCAAGGCTCGAGGCTGATCAATACGCCAAGGATCTTACTCTCATGAGACAGGTAGTGGAAGAAGTTTATCCTGATGCCAACAACAGACCCAAAATCCTGGGCCCTGCTGGGTTCTTTGACAGAGAATGGTTCAAGACCTTCCTTCAAAACACTGAACCGAACGCTGTTGATGGAGTCACCCACCATATTTACAATCTTGGTCCAGGGGTTGATCCTGAGCTTATCTATAAGGTTCGAGACCCTTATGTTTTGGATCAAATTGCTCAAACTTTCAAGGAAGCTGCGGACGTTTCAGCCAGCTTTGGGCCGTGGTCTAAGCCTTGGATTGGTGAATCTGGTGGCGCTTACAACAGTGGTGGCAGAACTGTTTCTCATACCTTTGCTGATGGCTTTTGGTACTTGGATCAATTGGGGATGACGGCCACATTCAATCATCATGTTTATTGTAGGCAAGCTTTGATCGGTGGAAACTATGGTCTGCTTAATACCACTTCGTTCATCCCTAACCCAGATTATTACAGCGCACTTCTATGGCACAGACTAATGGGAACGAAGGTCCTGTCGGCGTCCCACGACAGCTCTCCATATCTTCGTGTCTATTCTCACTGCACCAAGAACAATAACGGCGTAACAGTGCTTCTAATTAACATGTCGAACTCGACGAGCTATGATGTGAAGATTGTGAGCGAAAGAAGGCTTTATCCCAACGCCATGGGCGGGCGATTACAGGCAAGAGAAGAGTACCATTTGAGTCCCAAAGACGGCGATATTCAAAGCGACGTGATGCTCCTGAACGGAGCTCCTCTGCAGCTGACACCCAAGTTGGACATTCCCGGCATGTCGCCCAAGCTCGTGGATCCCACTTCTGCGGTGTCAGTTGCCCCTAATTCCTACGTCTTTGTCACCATTAAAGACTTCAAAGCAGCTGCTTGCGCCTGA 1554 46.72 MASKAFLFALICFISFSSSILAEFVKVSVKGVTTIAETDNDFICATLDWWPSDKCDYGQCPWGKAGLLNLDLQNIILSKAIKEFNPLRIRVGGSLQDQIIYRVGNSVKKCPQMKKQDDGLFGFSKGCFPMERWDELSDMFNKTSARITFGLNALIGKKPSNDGKGTWVGDWDPRNARDFIRYTASKGYQIDSYELGNELSGSGVSARLEADQYAKDLTLMRQVVEEVYPDANNRPKILGPAGFFDREWFKTFLQNTEPNAVDGVTHHIYNLGPGVDPELIYKVRDPYVLDQIAQTFKEAADVSASFGPWSKPWIGESGGAYNSGGRTVSHTFADGFWYLDQLGMTATFNHHVYCRQALIGGNYGLLNTTSFIPNPDYYSALLWHRLMGTKVLSASHDSSPYLRVYSHCTKNNNGVTVLLINMSNSTSYDVKIVSERRLYPNAMGGRLQAREEYHLSPKDGDIQSDVMLLNGAPLQLTPKLDIPGMSPKLVDPTSAVSVAPNSYVFVTIKDFKAAACA 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8505698 8508186 - CmaCh04G016910.1 Cma04g01691 292772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01691 517 PANTHER HEPARANASE-RELATED 19 517 - -
Cma04g01691 517 SUPERFAMILY (Trans)glycosidases 38 387 IPR017853 -
Cma04g01691 517 Gene3D Glycosidases 65 385 - -
Cma04g01691 517 Pfam Glycosyl hydrolase family 79, N-terminal domain 25 343 IPR005199 GO:0016020|GO:0016798
Cma04g01691 517 PANTHER OS07G0598400 PROTEIN 19 517 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01691 Cma-Chr4:8505698 Cma12g01182 Cma-Chr12:9277546 3.00E-171 dispersed
Cma01g00818 Cma-Chr1:4376754 Cma04g01691 Cma-Chr4:8505698 0 wgd
Cma11g00116 Cma-Chr11:621168 Cma04g01691 Cma-Chr4:8505698 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01691 K07964 - csv:101214214 880.552