Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01693 ATGTTTAGTTTCATGAAATCCCCCGCGAAAGTTACTAAGCAGAATTCTGTAGACGAATTATCAGGCGGATCTGGCACTAATCCTTTTGATTCAGATTCTGGGCCTGAAGCCAAACAAACTCTTAATGCTGCAAGAAGAACTTCTTCTGAGCCTGTGCTCGTTATACCTAACTCCATTTCCGCCAACGCTTTTGATGATGATGATGATGATGGATTTGTTGGAAAAAGAGGGACTGCAACTTCTGCAGCCTCTAAAGACAGGTACAAAAATGATTTTCGTGACTCAGGAGGACTCGAGAACCAAAGTGTGCAGGAATTGGAGAATTATGCTCTGTATAAAGCAGAGGAGACCACAAAATCTGTTAACAATTGCTTGAAGATTGCTGAGGACATAAGGGAAGATGCTACCAAGACCCTTGACATGTTGCATCAGCAGGGTGAGCAAATTGAGAGGACCCACAGGATGGCTGCTGATATGGATAAAGATTTAAGCAAGGGTGAGAAACTTCTGAATAATCTGGGAGGCATGTTCTCAAAGCCATGGAAGCCAAAGAAGACCAAAGAAATTACAGGCCCTCTTATAACAGCAGATCATTCCTCTGGGCGAACTGAAAACAACAAGGAGCAAAGGGAAAAACTCGGTGTATCTACGGGCAAAAAACAGTCGGCGACTAAAACACCACCCTCTGAACCAACAGGTGCAATACAAAAAGTTGAGGCTCAGAAGGAAATGCAAGATGATGCACTCTCAGATTTAAGTAATATCTTGGGTGATCTGAAGAGTATGGCTGTGGACATGGGAAGCGAGCTTGACAGGCAAAACAAAGCTCTTGATCATCTAAGCGACGATGTCGACGAGCTGAATTCTAGAGTGAAGGGTGCCAATCAGCGGGCTCGTCATTTGGTTGGGAAGTAA 915 44.04 MFSFMKSPAKVTKQNSVDELSGGSGTNPFDSDSGPEAKQTLNAARRTSSEPVLVIPNSISANAFDDDDDDGFVGKRGTATSAASKDRYKNDFRDSGGLENQSVQELENYALYKAEETTKSVNNCLKIAEDIREDATKTLDMLHQQGEQIERTHRMAADMDKDLSKGEKLLNNLGGMFSKPWKPKKTKEITGPLITADHSSGRTENNKEQREKLGVSTGKKQSATKTPPSEPTGAIQKVEAQKEMQDDALSDLSNILGDLKSMAVDMGSELDRQNKALDHLSDDVDELNSRVKGANQRARHLVGK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8513095 8516739 - CmaCh04G016930.1 Cma04g01693 292774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01693 304 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 304 - -
Cma04g01693 304 MobiDBLite consensus disorder prediction 8 56 - -
Cma04g01693 304 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 304 - -
Cma04g01693 304 MobiDBLite consensus disorder prediction 216 231 - -
Cma04g01693 304 Coils Coil 270 297 - -
Cma04g01693 304 CDD SNARE_SNAP25N_23N_29N_SEC9N 108 172 IPR044766 GO:0005484|GO:0031201
Cma04g01693 304 Gene3D - 97 175 - -
Cma04g01693 304 MobiDBLite consensus disorder prediction 174 234 - -
Cma04g01693 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 239 301 IPR000727 -
Cma04g01693 304 MobiDBLite consensus disorder prediction 1 85 - -
Cma04g01693 304 Gene3D - 236 303 - -
Cma04g01693 304 SUPERFAMILY SNARE fusion complex 101 172 - -
Cma04g01693 304 CDD SNARE_Qc 242 300 - -
Cma04g01693 304 MobiDBLite consensus disorder prediction 201 215 - -
Cma04g01693 304 SUPERFAMILY SNARE fusion complex 234 301 - -
Cma04g01693 304 Coils Coil 125 145 - -
Cma04g01693 304 SMART tSNARE_6 106 173 IPR000727 -
Cma04g01693 304 SMART tSNARE_6 234 301 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01693 Cma-Chr4:8513095 Cma11g00190 Cma-Chr11:970153 1.39E-104 dispersed
Cma01g00821 Cma-Chr1:4381257 Cma04g01693 Cma-Chr4:8513095 8.09E-07 wgd
Cma10g00221 Cma-Chr10:981152 Cma04g01693 Cma-Chr4:8513095 3.34E-108 wgd
Cma13g01086 Cma-Chr13:8208255 Cma04g01693 Cma-Chr4:8513095 2.06E-83 wgd
Cma18g01117 Cma-Chr18:9079296 Cma04g01693 Cma-Chr4:8513095 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01693 K18211 - csv:101213250 543.888