Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01693 ATGTTTAGTTTCATGAAATCCCCCGCGAAAGTTACTAAGCAGAATTCTGTAGACGAATTATCAGGCGGATCTGGCACTAATCCTTTTGATTCAGATTCTGGGCCTGAAGCCAAACAAACTCTTAATGCTGCAAGAAGAACTTCTTCTGAGCCTGTGCTCGTTATACCTAACTCCATTTCCGCCAACGCTTTTGATGATGATGATGATGATGGATTTGTTGGAAAAAGAGGGACTGCAACTTCTGCAGCCTCTAAAGACAGGTACAAAAATGATTTTCGTGACTCAGGAGGACTCGAGAACCAAAGTGTGCAGGAATTGGAGAATTATGCTCTGTATAAAGCAGAGGAGACCACAAAATCTGTTAACAATTGCTTGAAGATTGCTGAGGACATAAGGGAAGATGCTACCAAGACCCTTGACATGTTGCATCAGCAGGGTGAGCAAATTGAGAGGACCCACAGGATGGCTGCTGATATGGATAAAGATTTAAGCAAGGGTGAGAAACTTCTGAATAATCTGGGAGGCATGTTCTCAAAGCCATGGAAGCCAAAGAAGACCAAAGAAATTACAGGCCCTCTTATAACAGCAGATCATTCCTCTGGGCGAACTGAAAACAACAAGGAGCAAAGGGAAAAACTCGGTGTATCTACGGGCAAAAAACAGTCGGCGACTAAAACACCACCCTCTGAACCAACAGGTGCAATACAAAAAGTTGAGGCTCAGAAGGAAATGCAAGATGATGCACTCTCAGATTTAAGTAATATCTTGGGTGATCTGAAGAGTATGGCTGTGGACATGGGAAGCGAGCTTGACAGGCAAAACAAAGCTCTTGATCATCTAAGCGACGATGTCGACGAGCTGAATTCTAGAGTGAAGGGTGCCAATCAGCGGGCTCGTCATTTGGTTGGGAAGTAA 915 44.04 MFSFMKSPAKVTKQNSVDELSGGSGTNPFDSDSGPEAKQTLNAARRTSSEPVLVIPNSISANAFDDDDDDGFVGKRGTATSAASKDRYKNDFRDSGGLENQSVQELENYALYKAEETTKSVNNCLKIAEDIREDATKTLDMLHQQGEQIERTHRMAADMDKDLSKGEKLLNNLGGMFSKPWKPKKTKEITGPLITADHSSGRTENNKEQREKLGVSTGKKQSATKTPPSEPTGAIQKVEAQKEMQDDALSDLSNILGDLKSMAVDMGSELDRQNKALDHLSDDVDELNSRVKGANQRARHLVGK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8513095 8516739 - CmaCh04G016930.1 Cma04g01693 292774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01693 304 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 304 - -
Cma04g01693 304 MobiDBLite consensus disorder prediction 8 56 - -
Cma04g01693 304 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 1 304 - -
Cma04g01693 304 MobiDBLite consensus disorder prediction 216 231 - -
Cma04g01693 304 Coils Coil 270 297 - -
Cma04g01693 304 CDD SNARE_SNAP25N_23N_29N_SEC9N 108 172 IPR044766 GO:0005484|GO:0031201
Cma04g01693 304 Gene3D - 97 175 - -
Cma04g01693 304 MobiDBLite consensus disorder prediction 174 234 - -
Cma04g01693 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 239 301 IPR000727 -
Cma04g01693 304 MobiDBLite consensus disorder prediction 1 85 - -
Cma04g01693 304 Gene3D - 236 303 - -
Cma04g01693 304 SUPERFAMILY SNARE fusion complex 101 172 - -
Cma04g01693 304 CDD SNARE_Qc 242 300 - -
Cma04g01693 304 MobiDBLite consensus disorder prediction 201 215 - -
Cma04g01693 304 SUPERFAMILY SNARE fusion complex 234 301 - -
Cma04g01693 304 Coils Coil 125 145 - -
Cma04g01693 304 SMART tSNARE_6 106 173 IPR000727 -
Cma04g01693 304 SMART tSNARE_6 234 301 IPR000727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01693 K18211 SNAP25; synaptosomal-associated protein 25 - csv:101213250 543.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01693 Cma-Chr4:8513095 Cma11g00190 Cma-Chr11:970153 1.39E-104 dispersed
Cma01g00821 Cma-Chr1:4381257 Cma04g01693 Cma-Chr4:8513095 8.09E-07 wgd
Cma10g00221 Cma-Chr10:981152 Cma04g01693 Cma-Chr4:8513095 3.34E-108 wgd
Cma13g01086 Cma-Chr13:8208255 Cma04g01693 Cma-Chr4:8513095 2.06E-83 wgd
Cma18g01117 Cma-Chr18:9079296 Cma04g01693 Cma-Chr4:8513095 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g56 . . . . . Bpe10g00897 Bma14g01662 . Cmo04g01776 . . . . . . Cpe09g00936 Cpe01g01498 . . . . . . . . . . . . . . . . . . . . Chy10g01049 . . Blo11g00791 . . . . . . . . . Cma04g01693 . Car04g01730 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005869 2 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01693 Cma_Chr04 FPKM 0.669899 1.114834 0.42084 0.639031 5.006234 4.284582 4.978672 0.694409 0.434 0.514194