Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01698 ATGGAAAGCGGCGGCAAAGGGAGAGAGGAAGAACAAGACGGCATTTCTGTACATTCTCCATGTAAAGCTCCACCGTCCTCCGCTTCCTCTCTTCCCAAGGAGCAACCACAGATTGAATTGGAACTCAAACTCTTGCAAGCTCTTGAGATTTATCCGCTAGTCAAGCTACAAGGCATACATCGCCACTTTGTCCTCTTCGGGTTGATGGAATTTCTGCGAAGAAGCTTTGATCGTCCGTTCTCTTCTGATGAGGTTTTACAGTTGTTGGATCGGTTCTATAACCTGGAAATGCTGAAGCCAGACGACGAGGAAATGGAAATTCTGAATCAAGAGGAAGATTTTTGCTTACCTCAAACCTTCTTCGTCAAAGAAGAGTCTTAA 381 45.14 MESGGKGREEEQDGISVHSPCKAPPSSASSLPKEQPQIELELKLLQALEIYPLVKLQGIHRHFVLFGLMEFLRRSFDRPFSSDEVLQLLDRFYNLEMLKPDDEEMEILNQEEDFCLPQTFFVKEES 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8534942 8537282 - CmaCh04G016980.1 Cma04g01698 292779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01698 126 MobiDBLite consensus disorder prediction 1 16 - -
Cma04g01698 126 PANTHER BNAA07G09500D PROTEIN 8 125 - -
Cma04g01698 126 MobiDBLite consensus disorder prediction 1 34 - -
Cma04g01698 126 PANTHER MRG-BINDING PROTEIN 8 125 IPR012423 GO:0005634|GO:0006355|GO:0043189
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01698 - - - csv:101212766 231.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01698 Cma18g01110 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g01110 Cma-Chr18:9056594 Cma04g01698 Cma-Chr4:8534942 7.06E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g50 . . . . . . Bma14g01664 . Cmo04g01783 Cmo18g01132 . Cma18g01110 . . Sed06g1771 Cpe09g00217 Cpe01g01503 Bhi07g01499 Tan04g1013 Cmetu10g0697 Lac13g0370 . . . Cla05g02396 . . Cco05g2644 Clacu05g2573 Cmu05g2429 Cre05g2546 . . . . Lsi04g00367 Csa05g02507 Chy10g01055 Cme10g00362 . Blo11g00793 . . . . . . . . . Cma04g01698 . Car04g01735 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008329 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01698 Cma_Chr04 FPKM 2.838424 3.431581 4.234377 4.658342 7.162255 5.934332 7.916579 6.731793 7.402852 7.775029