Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01704 ATGGGGGAAGCCAACGAAGGAGGAAGTAGAGGAATGGAGAAGGTTCCTCTGCAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTCTGTGTAGAAATTCACATCAGCCCCAAATTGGGGCGTTTAATGAAGAGGGTGATGCAGAGGAGATTGAGCTGAATCTTGGGCTTTCACTTGGGGGTCGATTTGGGGTTGACAAGAATTCTAAGATACTTGTTCGGTCGTCGTCTATTGCTGGGACGATGCGTTTGAGGGACGACGAGGCATCGACTCCGACGGCGGTATCGTACCCGGGTCTTATTCGGACGTCGTCTCTTCCGCCGGAGACGGAAGAGGAGTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCGAAGAGGAGGAGGTTTGAGAAGCAGAGGAATAAGGATGGAATTGGGATGGGGAGTGGTGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGGAGGCCTTGCTGGATTGAATTTGAGAGAGAAAAGGGTTGGTTCGGGTGTTTTGACAACAGTGGCACCGCCATTTGGGACGACAACGTGGGCTGCTGGTGCTCGACAGGCTGTTATCAGCGGAATTGTGGATGAAGTTGTCAAAGGGAAAGGTGGTTGTACATCGGGCGGTGGCGGCGGCAGCAGAGGTTTACCGGGGTTCGGACAGCCTGGTTCTCAGTGCTCCGCCGAATCACAGGGCGGAAGCTCGTCGGGGATGTCGGAATTGGACAGCAAACACATCCAAGGATCAAGCAGTTACGGCGAAGCAAGAAGCTCCTCGCAAGAGCAAGGCAACCAAGAGGCTGGAGGTTCTTCAGGATCGAAGATGTGTGAGAATCCATTGGGCAGTTCCAAAGCAGAGACGAAAACGAAGCCTGATTTGGGGGAGAACAGTGGGAGAGAAACGGGGACGTCGTCAATGGAAGACATGCCTTGTGTGTTCACAATAGGGGATGGGCCTGATGGGAGAAGGGTGGAAGGGATTCTTTACAAGTATGGGAAAGGGGAGGAAGTGAGGATAATGTGTGTATGCCATGGGAAGTTTCTGTCGCCAGCAGAGTTTGTGAAGCATGCTGGTGGGAAAAATGTGGCTCACCCACTAAGACATATAGTTGTCAATCCCAATTCTGGTTCTTTTTCGTGA 1158 51.64 MGEANEGGSRGMEKVPLQTEKYPTDLLQRFLCRNSHQPQIGAFNEEGDAEEIELNLGLSLGGRFGVDKNSKILVRSSSIAGTMRLRDDEASTPTAVSYPGLIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGSGGCFEEERREIGGLAGLNLREKRVGSGVLTTVAPPFGTTTWAAGARQAVISGIVDEVVKGKGGCTSGGGGGSRGLPGFGQPGSQCSAESQGGSSSGMSELDSKHIQGSSSYGEARSSSQEQGNQEAGGSSGSKMCENPLGSSKAETKTKPDLGENSGRETGTSSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGSFS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8558766 8561666 - CmaCh04G017040.1 Cma04g01704 292785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01704 385 Pfam Putative nuclear localisation signal 101 249 IPR032310 -
Cma04g01704 385 PANTHER NINJA-FAMILY PROTEIN AFP1 19 381 - -
Cma04g01704 385 PANTHER AFP HOMOLOG 2 19 381 IPR031307 GO:0007165
Cma04g01704 385 Pfam Tify domain binding domain 343 377 IPR032308 -
Cma04g01704 385 Pfam Ethylene-responsive binding factor-associated repression 48 81 IPR012463 -
Cma04g01704 385 Coils Coil 117 137 - -
Cma04g01704 385 MobiDBLite consensus disorder prediction 211 316 - -
Cma04g01704 385 MobiDBLite consensus disorder prediction 229 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01704 - - - csv:101220339 598.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01704 Cma18g01103 CCT
Cma04g01704 Cma18g01103 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01704 Cma-Chr4:8558766 Cma18g00004 Cma-Chr18:9878 5.26E-08 dispersed
Cma13g01072 Cma-Chr13:8107810 Cma04g01704 Cma-Chr4:8558766 3.34E-27 wgd
Cma18g01103 Cma-Chr18:9025767 Cma04g01704 Cma-Chr4:8558766 1.07E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g33 . . . . . Bpe10g00900 Bma14g01666 Bma15g00131 Cmo04g01789 Cmo18g01124 . Cma18g01103 . Car18g01017 Sed06g1778 Cpe09g00223 Cpe01g01507 Bhi07g01484 Tan04g0992 Cmetu10g1842 Lac13g0380 Hepe10g1799 . . Cla05g02390 . . Cco05g2637 Clacu05g2564 Cmu05g2421 Cre05g2538 Cone13ag0904 Cone19ag0901 . . Lsi04g00361 Csa05g02516 Chy10g01060 Cme10g00355 Blo06g00928 Blo11g00794 . . . . . . . . . Cma04g01704 . Car04g01739 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006440 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01704 Cma_Chr04 FPKM 11.939215 12.516446 17.27062 18.497503 4.66824 3.651924 4.24298 16.787458 19.405138 18.45801