Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01704 ATGGGGGAAGCCAACGAAGGAGGAAGTAGAGGAATGGAGAAGGTTCCTCTGCAAACTGAAAAGTACCCAACAGATCTGTTGCAGAGATTTCTGTGTAGAAATTCACATCAGCCCCAAATTGGGGCGTTTAATGAAGAGGGTGATGCAGAGGAGATTGAGCTGAATCTTGGGCTTTCACTTGGGGGTCGATTTGGGGTTGACAAGAATTCTAAGATACTTGTTCGGTCGTCGTCTATTGCTGGGACGATGCGTTTGAGGGACGACGAGGCATCGACTCCGACGGCGGTATCGTACCCGGGTCTTATTCGGACGTCGTCTCTTCCGCCGGAGACGGAAGAGGAGTGGAGGAAGAGGAAGGAATTGCAGACGTTGAGGCGAATGGAGGCGAAGAGGAGGAGGTTTGAGAAGCAGAGGAATAAGGATGGAATTGGGATGGGGAGTGGTGGGTGTTTTGAAGAAGAGAGGCGTGAAATTGGAGGCCTTGCTGGATTGAATTTGAGAGAGAAAAGGGTTGGTTCGGGTGTTTTGACAACAGTGGCACCGCCATTTGGGACGACAACGTGGGCTGCTGGTGCTCGACAGGCTGTTATCAGCGGAATTGTGGATGAAGTTGTCAAAGGGAAAGGTGGTTGTACATCGGGCGGTGGCGGCGGCAGCAGAGGTTTACCGGGGTTCGGACAGCCTGGTTCTCAGTGCTCCGCCGAATCACAGGGCGGAAGCTCGTCGGGGATGTCGGAATTGGACAGCAAACACATCCAAGGATCAAGCAGTTACGGCGAAGCAAGAAGCTCCTCGCAAGAGCAAGGCAACCAAGAGGCTGGAGGTTCTTCAGGATCGAAGATGTGTGAGAATCCATTGGGCAGTTCCAAAGCAGAGACGAAAACGAAGCCTGATTTGGGGGAGAACAGTGGGAGAGAAACGGGGACGTCGTCAATGGAAGACATGCCTTGTGTGTTCACAATAGGGGATGGGCCTGATGGGAGAAGGGTGGAAGGGATTCTTTACAAGTATGGGAAAGGGGAGGAAGTGAGGATAATGTGTGTATGCCATGGGAAGTTTCTGTCGCCAGCAGAGTTTGTGAAGCATGCTGGTGGGAAAAATGTGGCTCACCCACTAAGACATATAGTTGTCAATCCCAATTCTGGTTCTTTTTCGTGA 1158 51.64 MGEANEGGSRGMEKVPLQTEKYPTDLLQRFLCRNSHQPQIGAFNEEGDAEEIELNLGLSLGGRFGVDKNSKILVRSSSIAGTMRLRDDEASTPTAVSYPGLIRTSSLPPETEEEWRKRKELQTLRRMEAKRRRFEKQRNKDGIGMGSGGCFEEERREIGGLAGLNLREKRVGSGVLTTVAPPFGTTTWAAGARQAVISGIVDEVVKGKGGCTSGGGGGSRGLPGFGQPGSQCSAESQGGSSSGMSELDSKHIQGSSSYGEARSSSQEQGNQEAGGSSGSKMCENPLGSSKAETKTKPDLGENSGRETGTSSMEDMPCVFTIGDGPDGRRVEGILYKYGKGEEVRIMCVCHGKFLSPAEFVKHAGGKNVAHPLRHIVVNPNSGSFS 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8558766 8561666 - CmaCh04G017040.1 Cma04g01704 292785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01704 385 Pfam Putative nuclear localisation signal 101 249 IPR032310 -
Cma04g01704 385 PANTHER NINJA-FAMILY PROTEIN AFP1 19 381 - -
Cma04g01704 385 PANTHER AFP HOMOLOG 2 19 381 IPR031307 GO:0007165
Cma04g01704 385 Pfam Tify domain binding domain 343 377 IPR032308 -
Cma04g01704 385 Pfam Ethylene-responsive binding factor-associated repression 48 81 IPR012463 -
Cma04g01704 385 Coils Coil 117 137 - -
Cma04g01704 385 MobiDBLite consensus disorder prediction 211 316 - -
Cma04g01704 385 MobiDBLite consensus disorder prediction 229 291 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01704 Cma18g01103 CCT
Cma04g01704 Cma18g01103 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01704 Cma-Chr4:8558766 Cma18g00004 Cma-Chr18:9878 5.26E-08 dispersed
Cma13g01072 Cma-Chr13:8107810 Cma04g01704 Cma-Chr4:8558766 3.34E-27 wgd
Cma18g01103 Cma-Chr18:9025767 Cma04g01704 Cma-Chr4:8558766 1.07E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01704 - - csv:101220339 598.971