Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01705 ATGTTCGGTGATGGACACGTGTCGAGAACCCGCCCTCGCTGTGCGGGGGCGGCGGCAATGTGTGGAATTGCTTTGGTCGTTTCTGGCTGTCGCCTTGATTTGTCGTCTCTACATGTAGACGCCAGAGCTCCGTCTCCTCATCCAGTGCACGAGCATCTCGAGTTTTCGATAGATGATCTTGAAGCGGCATTGCGGAGAAGGGGCCCCGATAGCTTAGGCGGAGTGAAGGTTTTTATTTCCTCAATATCTTCTAATCCTGGTGAAGAGCAGCAGTTTGAGTGTTTTGTTGAGAGGGTTGATTGTGGAGTTGCATTTCAGAATCAGAATGATCAACACGAGATGGAAAATGGAAGGATTCTCCATTCTCATGACAGTTGTAGTAGTCTCATCTCTGGTGCGCAGTTTTATTTTCTGGGGGCTACATTACAGCTTAGAGGGCTTAACCCTATTGTTCAGCCACTGATGGATGCTTCCCGCAATGTTCTTGTTTACAATGGTGAAATATTTGGAGGAATACACGTTGAGTATCATCAAAATGATGCTGAAGCTCTTATGCAAGCTCTTGGGAATTGTTGCGCAAGCAATGTTAGTTTAGATACGAACACATGTTTAGGGGAATGTAAGAGAGAAAGCACTATTGTAGACGTTCTTTCAAACATTCAAGGGCCATGGGCAATCATCTACTTCGCGGTTAGTGCAAAAACTTTGTGGTTTGGTAGGGATGCCTTTGGTAGGCGAAGTCTTCTTGTTCACTGGCCAACCGTGGTGGATTCTCGGTTTCTTTTGTCTTCTGTATCACCAGCTTCCTCCATGTTTCACGACTCTGGACATGACAATGATAATGGTACTTGTGAAGTGAGCTTCTGGGAAGAACTTCCATGTGGGATTTACAGCATCTCTTTTGATGCTCAGAGCACAGACGGTTGCCTGGTTGGTGAAGTCAAAAGGCATGAATGGACCAATGAGTCACTGAAAGAACTTGTCGAGTGGAAGAGAACTTGTATTGTACCTAAACCTGGAGACATCTCCTCTTCATATCACGAGGATCTTTTGTCACAGCATGAAAGTAATTCAGCATGTTTGCATAACTTGCAATCAGTACCAGAGGGTATCCGAGCTCCTGTTTCAACACCTGCGGAGATTCTGCTGGATGCTCTAAGGAAGTCTCTTATCAGGCGTACTTCACTTTATACAATTTTCCAGGGTACAACATCTGCTTCCAGAAAAGCAGAACTTGGTCCTGTGGCCATTCTTTTTTCCGGTGGATTGGATTCTATGACACTAGCAGCATTACTGGATGAGTGCCTTGATGCCTGTTATGAGATAGATCTTCTTAATGTCAGCTTTGATGGATGTTCTGCACCTGACCGAATCTCAGCGAAGGCTGGAGTACAGGAACTGACAAGAATTGCCCCTCTAAGAAGGTGGAAGCTGGTTGAGATTGATGCTGATTTGTCAAATTTGACCTCCGAAACCAAGCATGTCATGTCTCTAATAAATCCTGCAAATACATACATGGACCTGAATATTGGAATAGCTTTGTGGCTGGCCTCTGGTGGCGATGGTTGGATTTATGAATCAATCGACAAGGATGATAAGTTTCATCGACGTGTAAAATATAAGTCTCAGGCCAAGATTCTCCTTGTTGGTTCTGGTGCCGATGAGCAATGTGCTGGTTATGGTAGGCATCGAACAAAATATAGACAAGGGGGCTGGCATCTTTTAAATGAGGAAATGAAGTTGGATATTCAGAGAATCTGGAAGAGAAATCTTGGGAGAGATGACAGATGTATTGCAGATAATGGGAAGGAGGCTAGATTTCCCTTTCTGGATGAAGACGTTATACATACATTGCTAGCGTTTCCTCTATGGGAGGTTACCGACCTCGAGAAACCTGCTGGAACCGGTGATAAGAAGATACTTAGGGAGGTTGCGAAATTACTTGGTCTGCACGAAGCAGGAGCTCTACCTAAAAGAGCAATACAGTTTGGCTCAAGGATTGCGAGGGAATCAAACCGCAAGAACTTCGGAAGCAACCGGGCTGCTAATCAGGCCTCAGCAGGAAGTGTGAAGTTCAACAAGCATTCTGTTCTTCAGTGA 2100 45.0 MFGDGHVSRTRPRCAGAAAMCGIALVVSGCRLDLSSLHVDARAPSPHPVHEHLEFSIDDLEAALRRRGPDSLGGVKVFISSISSNPGEEQQFECFVERVDCGVAFQNQNDQHEMENGRILHSHDSCSSLISGAQFYFLGATLQLRGLNPIVQPLMDASRNVLVYNGEIFGGIHVEYHQNDAEALMQALGNCCASNVSLDTNTCLGECKRESTIVDVLSNIQGPWAIIYFAVSAKTLWFGRDAFGRRSLLVHWPTVVDSRFLLSSVSPASSMFHDSGHDNDNGTCEVSFWEELPCGIYSISFDAQSTDGCLVGEVKRHEWTNESLKELVEWKRTCIVPKPGDISSSYHEDLLSQHESNSACLHNLQSVPEGIRAPVSTPAEILLDALRKSLIRRTSLYTIFQGTTSASRKAELGPVAILFSGGLDSMTLAALLDECLDACYEIDLLNVSFDGCSAPDRISAKAGVQELTRIAPLRRWKLVEIDADLSNLTSETKHVMSLINPANTYMDLNIGIALWLASGGDGWIYESIDKDDKFHRRVKYKSQAKILLVGSGADEQCAGYGRHRTKYRQGGWHLLNEEMKLDIQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIHTLLAFPLWEVTDLEKPAGTGDKKILREVAKLLGLHEAGALPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVKFNKHSVLQ 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8562198 8568865 + CmaCh04G017050.1 Cma04g01705 292786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01705 699 CDD Asn_Synthase_B_C 413 664 IPR001962 GO:0004066|GO:0006529
Cma04g01705 699 Pfam Glutamine amidotransferase domain 152 264 IPR017932 -
Cma04g01705 699 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 20 684 - -
Cma04g01705 699 Gene3D HUPs 376 697 IPR014729 -
Cma04g01705 699 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 48 284 IPR029055 -
Cma04g01705 699 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 60 268 IPR029055 -
Cma04g01705 699 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 409 686 - -
Cma04g01705 699 Pfam Asparagine synthase 535 647 IPR001962 GO:0004066|GO:0006529
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01705 - - - bhj:120081619 1194.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g30 . . . . . Bpe10g00901 . Bma15g00130 Cmo04g01790 . . . . . Sed06g1781 . Cpe01g01509 Bhi07g01483 Tan04g0990 Cmetu10g1518 Lac13g0381 Hepe10g1800 . . Cla05g02389 . . Cco05g2636 Clacu05g2563 Cmu05g2420 Cre05g2537 Cone13ag0903 Cone19ag0900 . . Lsi04g00360 Csa05g02517 Chy10g01061 Cme10g00354 Blo06g00929 . . . . . . . . . . Cma04g01705 . Car04g01740 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007690 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01705 Cma_Chr04 FPKM 17.861803 19.116539 20.889292 20.661465 13.082664 12.369397 14.306864 46.125893 45.5895 47.515469