Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01708 ATGGCTCTATGTGGGGATCATAAAGATAGAGAGCTAAGGATCCATGAAAGTTTGGAAGAGCTAAGTACTGATTTAGCTGACTATATTGCTGAATTATCAGAGGCATCGGTGAAAGAACGTGGGGTGTTTTCTATAGCGTTGTCTGGTGGTTCACTCATTAGCTTAATGGGGAAGCTGTGTGAAGCTCCTTACAACAAGACTGTGGACTGGGGCAAGTGGTATATATTTTGGGCTGATGAACGTGTTGTTGCAAAAAGCCATGCCGACAGCAATTATAAGCTTGCAAAGGATAACCTTCTTTCTAAGGTGCCAATTGTTCCGAGCCATGTACACTCTATCAATGATTTGGTGTCAGCTGAGGAAGCTGCCGATGAGTACAAGTTTGTCATTCGACAGTCGGTAAAATCCCGCATAGTAAGTGTGTCTGATGTGAGTGACAGCCCCAAGTTTGACCTCATACTACTTGGAATGGGTGCTGATGGCCATGTTGCCTCATTATTTCCCGATCACTCAGTGCTCGAAGAGAAAGATGAATGGGTTGCCTTCATTACCAATTCTCCAAAACCTCCTCCAGAGAGAATCACCTTCACGTTCCCTGTGATCAACTCTGCATCAAACGTGGCCATTGTCGTGACAGGTGAAAACAAAGCAGAGACAGTACATTTGGCCATTGATGATGTAGGAGACGACTCCCCGCTCCTACCTGCAAGGTTGATACAGCCAAGGAAAGGAAAGTTGACATGGTTTTTGGATAAATATGCAGCTTCGAAACTTGACAATTACCAATTTTCGGAGTAG 798 44.49 MALCGDHKDRELRIHESLEELSTDLADYIAELSEASVKERGVFSIALSGGSLISLMGKLCEAPYNKTVDWGKWYIFWADERVVAKSHADSNYKLAKDNLLSKVPIVPSHVHSINDLVSAEEAADEYKFVIRQSVKSRIVSVSDVSDSPKFDLILLGMGADGHVASLFPDHSVLEEKDEWVAFITNSPKPPPERITFTFPVINSASNVAIVVTGENKAETVHLAIDDVGDDSPLLPARLIQPRKGKLTWFLDKYAASKLDNYQFSE 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8585126 8588679 + CmaCh04G017080.1 Cma04g01708 292789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01708 265 SUPERFAMILY NagB/RpiA/CoA transferase-like 11 260 IPR037171 -
Cma04g01708 265 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 18 248 IPR006148 GO:0005975
Cma04g01708 265 Gene3D - 8 261 - -
Cma04g01708 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE 1 265 IPR039104 -
Cma04g01708 265 Coils Coil 18 38 - -
Cma04g01708 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE-RELATED 1 265 - -
Cma04g01708 265 TIGRFAM pgl: 6-phosphogluconolactonase 14 258 IPR005900 GO:0005975|GO:0006098|GO:0017057
Cma04g01708 265 CDD 6PGL 19 250 IPR005900 GO:0005975|GO:0006098|GO:0017057
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01708 K01057 PGLS, pgl, devB; 6-phosphogluconolactonase [EC:3.1.1.31] - csv:101210739 476.478
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01708 Cma18g01099 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01708 Cma-Chr4:8585126 Cma15g01007 Cma-Chr15:6079656 2.73E-93 dispersed
Cma18g01099 Cma-Chr18:9000091 Cma04g01708 Cma-Chr4:8585126 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g22 . . . . . Bpe10g00902 Bma14g01667 Bma15g00129 Cmo04g01793 Cmo18g01121 . Cma18g01099 . Car18g01014 Sed01g3463 Cpe09g00227 Cpe01g01511 Bhi07g01477 Tan04g0980 Cmetu09g1194 . . . . Cla05g02387 . . Cco05g2632 Clacu05g2560 Cmu05g2417 Cre05g2534 Cone13ag0900 Cone19ag0898 . . Lsi04g00357 Csa05g02520 Chy10g01064 Cme10g00350 . Blo11g00795 . . . . . . . . . Cma04g01708 . Car04g01742 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003280 1 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 6 5 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01708 Cma_Chr04 FPKM 42.973747 45.145721 27.726715 27.207132 1.974323 2.315758 2.631868 6.244149 6.887289 7.231376