Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01708 ATGGCTCTATGTGGGGATCATAAAGATAGAGAGCTAAGGATCCATGAAAGTTTGGAAGAGCTAAGTACTGATTTAGCTGACTATATTGCTGAATTATCAGAGGCATCGGTGAAAGAACGTGGGGTGTTTTCTATAGCGTTGTCTGGTGGTTCACTCATTAGCTTAATGGGGAAGCTGTGTGAAGCTCCTTACAACAAGACTGTGGACTGGGGCAAGTGGTATATATTTTGGGCTGATGAACGTGTTGTTGCAAAAAGCCATGCCGACAGCAATTATAAGCTTGCAAAGGATAACCTTCTTTCTAAGGTGCCAATTGTTCCGAGCCATGTACACTCTATCAATGATTTGGTGTCAGCTGAGGAAGCTGCCGATGAGTACAAGTTTGTCATTCGACAGTCGGTAAAATCCCGCATAGTAAGTGTGTCTGATGTGAGTGACAGCCCCAAGTTTGACCTCATACTACTTGGAATGGGTGCTGATGGCCATGTTGCCTCATTATTTCCCGATCACTCAGTGCTCGAAGAGAAAGATGAATGGGTTGCCTTCATTACCAATTCTCCAAAACCTCCTCCAGAGAGAATCACCTTCACGTTCCCTGTGATCAACTCTGCATCAAACGTGGCCATTGTCGTGACAGGTGAAAACAAAGCAGAGACAGTACATTTGGCCATTGATGATGTAGGAGACGACTCCCCGCTCCTACCTGCAAGGTTGATACAGCCAAGGAAAGGAAAGTTGACATGGTTTTTGGATAAATATGCAGCTTCGAAACTTGACAATTACCAATTTTCGGAGTAG 798 44.49 MALCGDHKDRELRIHESLEELSTDLADYIAELSEASVKERGVFSIALSGGSLISLMGKLCEAPYNKTVDWGKWYIFWADERVVAKSHADSNYKLAKDNLLSKVPIVPSHVHSINDLVSAEEAADEYKFVIRQSVKSRIVSVSDVSDSPKFDLILLGMGADGHVASLFPDHSVLEEKDEWVAFITNSPKPPPERITFTFPVINSASNVAIVVTGENKAETVHLAIDDVGDDSPLLPARLIQPRKGKLTWFLDKYAASKLDNYQFSE 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8585126 8588679 + CmaCh04G017080.1 Cma04g01708 292789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01708 265 SUPERFAMILY NagB/RpiA/CoA transferase-like 11 260 IPR037171 -
Cma04g01708 265 Pfam Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 18 248 IPR006148 GO:0005975
Cma04g01708 265 Gene3D - 8 261 - -
Cma04g01708 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE 1 265 IPR039104 -
Cma04g01708 265 Coils Coil 18 38 - -
Cma04g01708 265 PANTHER 6-PHOSPHOGLUCONOLACTONASE-RELATED 1 265 - -
Cma04g01708 265 TIGRFAM pgl: 6-phosphogluconolactonase 14 258 IPR005900 GO:0005975|GO:0006098|GO:0017057
Cma04g01708 265 CDD 6PGL 19 250 IPR005900 GO:0005975|GO:0006098|GO:0017057
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01708 Cma18g01099 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01708 Cma-Chr4:8585126 Cma15g01007 Cma-Chr15:6079656 2.73E-93 dispersed
Cma18g01099 Cma-Chr18:9000091 Cma04g01708 Cma-Chr4:8585126 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01708 K01057 - csv:101210739 476.478