Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01709 ATGGGCAGCTCCGAAGACAAATCTTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTTGCGGTTGGGATTCCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGCGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAATACCACCTTTACAAGGCCAATGCATTGATCATCATCCTCTCACTTTTCAGCCTCAGGTTGGCTTCTCTAATGATACTCGAAAGGGTGCATCGATATCGTCTACTTCGTCGTCATCTTCAATGCCAAATGAACCTCCCTCTCCAAGTTTTGTTGTCAAACCTCCAGAGAAGAAACACAGACTCCCATCAGCTTACAATTGTTTCATGAAGGAGGAGATCCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGTTAGAAAAAGGGAATGA 537 45.07 MGSSEDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTIPPLQGQCIDHHPLTFQPQVGFSNDTRKGASISSTSSSSSMPNEPPSPSFVVKPPEKKHRLPSAYNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPNDVRKRE 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8594676 8596684 + CmaCh04G017090.1 Cma04g01709 292790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01709 178 MobiDBLite consensus disorder prediction 84 116 - -
Cma04g01709 178 MobiDBLite consensus disorder prediction 84 105 - -
Cma04g01709 178 SUPERFAMILY HMG-box 104 156 IPR036910 -
Cma04g01709 178 Gene3D High mobility group box domain 97 162 IPR036910 -
Cma04g01709 178 Pfam YABBY protein 15 158 IPR006780 GO:0007275
Cma04g01709 178 PANTHER PROTEIN YABBY 6-RELATED 8 169 IPR006780 GO:0007275
Cma04g01709 178 PANTHER PROTEIN CRABS CLAW 8 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01709 K25796 YAB; plant-specific transcription factor YABBY family protein - cmos:111458487 337.421
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01709 Cma18g01098 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01709 Cma-Chr4:8594676 Cma12g01202 Cma-Chr12:9427635 2.52E-39 dispersed
Cma18g01098 Cma-Chr18:8991641 Cma04g01709 Cma-Chr4:8594676 3.29E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g12 . Blo16g01078 . . . . . . Cmo04g01795 Cmo18g01120 . Cma18g01098 . Car18g01013 Sed07g2037 Cpe09g00228 Cpe01g01514 Bhi07g01472 Tan04g0975 Cmetu10g1095 . . . . . . . . . . . Cone13ag0895 Cone19ag0892 . . Lsi04g00355 Csa05g02521 . Cme10g00349 . . . . . . . . . . . Cma04g01709 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01709 CCT 17 174 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 9.2e-44 174.1
Cma02g01557 . 71 231 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 1.9e-43 172.9
Cma15g01149 CCT 81 236 C2C2-YABBY Transcription Factor Family AT2G45190 57.4 1.2e-42 170.2
Cma02g01297 . 1 176 C2C2-YABBY Transcription Factor Family AT1G08465 62.5 7.2e-52 201.1
Cma11g00536 . 40 214 C2C2-YABBY Transcription Factor Family AT1G08465 54.7 1.0e-42 170.6
Cma02g01557 . 27 219 C2C2-YABBY Transcription Factor Family AT1G08465 52.6 1.4e-42 170.2
Cma15g01149 CCT 37 224 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 1.8e-42 169.9
Cma10g00541 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.7e-37 153.3
Cma06g00763 CCT 19 187 C2C2-YABBY Transcription Factor Family AT1G08465 52.7 2.2e-37 152.9
Cma02g01557 . 38 230 C2C2-YABBY Transcription Factor Family AT4G00180 57.0 4.0e-51 198.7
Cma15g01149 CCT 48 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.0 2.0e-50 196.4
Cma04g01741 CST 1 160 C2C2-YABBY Transcription Factor Family AT1G23420 52.0 2.1e-36 150.2
Cma11g00536 . 42 210 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.6e-63 238.4
Cma05g01287 . 8 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.4 4.4e-61 231.5
Cma12g01202 . 8 168 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 3.3e-56 215.3
Cma10g00541 . 7 165 C2C2-YABBY Transcription Factor Family AT2G26580 69.2 7.3e-56 214.2
Cma02g01297 . 1 176 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 2.3e-46 182.6
Cma15g01149 CCT 37 196 C2C2-YABBY Transcription Factor Family AT2G26580 56.4 2.9e-44 175.6
Cma02g01557 . 29 191 C2C2-YABBY Transcription Factor Family AT2G26580 54.2 5.4e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004928 1 2 1 1 1 2 1 2 2 0 1 2 2 1 1 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34900 PF04690 YABBY 1.40E-50 CL0114 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01709 Cma_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0