Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01709 ATGGGCAGCTCCGAAGACAAATCTTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTTGCGGTTGGGATTCCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGCGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAATACCACCTTTACAAGGCCAATGCATTGATCATCATCCTCTCACTTTTCAGCCTCAGGTTGGCTTCTCTAATGATACTCGAAAGGGTGCATCGATATCGTCTACTTCGTCGTCATCTTCAATGCCAAATGAACCTCCCTCTCCAAGTTTTGTTGTCAAACCTCCAGAGAAGAAACACAGACTCCCATCAGCTTACAATTGTTTCATGAAGGAGGAGATCCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGTTAGAAAAAGGGAATGA 537 45.07 MGSSEDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTIPPLQGQCIDHHPLTFQPQVGFSNDTRKGASISSTSSSSSMPNEPPSPSFVVKPPEKKHRLPSAYNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPNDVRKRE 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8594676 8596684 + CmaCh04G017090.1 Cma04g01709 292790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01709 178 MobiDBLite consensus disorder prediction 84 116 - -
Cma04g01709 178 MobiDBLite consensus disorder prediction 84 105 - -
Cma04g01709 178 SUPERFAMILY HMG-box 104 156 IPR036910 -
Cma04g01709 178 Gene3D High mobility group box domain 97 162 IPR036910 -
Cma04g01709 178 Pfam YABBY protein 15 158 IPR006780 GO:0007275
Cma04g01709 178 PANTHER PROTEIN YABBY 6-RELATED 8 169 IPR006780 GO:0007275
Cma04g01709 178 PANTHER PROTEIN CRABS CLAW 8 169 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01709 Cma18g01098 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01709 Cma-Chr4:8594676 Cma12g01202 Cma-Chr12:9427635 2.52E-39 dispersed
Cma18g01098 Cma-Chr18:8991641 Cma04g01709 Cma-Chr4:8594676 3.29E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34900 PF04690 YABBY 1.40E-50 CL0114 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01709 K25796 - cmos:111458487 337.421