Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01711 ATGAAGATGATGGGCCAACACCGTTTCATGAGGAGCACGTTCAGCAATAAGCCCCCACACACCCAAAAGGAATTAAAGAAGAAAAAAAGGAAACCAAACCAACTGAAATCATTACAAAGCAAACAAACAAAGATAAAAGAAACTAAACTATGTGATTCACAATCACAATGTCTCTTTACCGACACAAAGAACTCTGTTCAATCTCAGTCAAATTCTAACGAAAACTCCCAACCCTTTCGTTTTTCTTCTGTTTTTTCTTGTTTTGAAGGAAACCCATCTCCAGAAATGGGGAAAACTGGAACCAAGTTGCCAAGTTTCTGCCTGAACCGGATCCGGCCTCACGTTCGAGTGCCTATTCAGTCCAAATTGGACTCTGTTTCTGTGAAAACCGGACCGAAGAAGGCTGATGATTGTGTAGTGGGTGGTGAGGTTGGAGCTAAGCCAGGGCTGGGAAATGGAAGGAAGATCATGATTGTGATTGATTCCACCATTGAAGCTGAAGGAGCTCTTCAATGGGCTCTGTCTCACACTGTGCAGAATCAAGACAAGATTGTTCTACTCCATGTTATCAAGCCTTCAAGAAAGGGGGAAGGACTAAGCAAGGAGACATCACCAAGAGCATATGAATTGGTTCATTCCATGAGAAATTTATGTCAATTGAAGAGACCAGAGGTGGAAGTCGAAGTTGCAGTGGTGGAAGGAGGGAAAGAGAAAGGGTCGGTGATTGTGGAAGAAGCGAGAAAGCAAGAGGCATCGTTGCTGGTTTTGGGGCAGAAGAAACGGTCCACGACATGGCGGCTTCTGATGGTGTGGGCTGGACACCGATGGGGCGGCGGCGGCGGCGTCGGTGGCGGTGGGGCAGTGGAGTATTGCATACAGAATGCGAGCTGTATGGCGATTGCAGTGAGAAGGAAGAGCAAGAAATTGGGTGGGTATTTGATCACGACAAAGCGACAAAAGGATTTCTGGCTTTTGGCTTAA 981 46.18 MKMMGQHRFMRSTFSNKPPHTQKELKKKKRKPNQLKSLQSKQTKIKETKLCDSQSQCLFTDTKNSVQSQSNSNENSQPFRFSSVFSCFEGNPSPEMGKTGTKLPSFCLNRIRPHVRVPIQSKLDSVSVKTGPKKADDCVVGGEVGAKPGLGNGRKIMIVIDSTIEAEGALQWALSHTVQNQDKIVLLHVIKPSRKGEGLSKETSPRAYELVHSMRNLCQLKRPEVEVEVAVVEGGKEKGSVIVEEARKQEASLLVLGQKKRSTTWRLLMVWAGHRWGGGGGVGGGGAVEYCIQNASCMAIAVRRKSKKLGGYLITTKRQKDFWLLA 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8609437 8610719 + CmaCh04G017110.1 Cma04g01711 292792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01711 326 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 55 326 - -
Cma04g01711 326 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 154 305 - -
Cma04g01711 326 Pfam Universal stress protein family 154 303 IPR006016 -
Cma04g01711 326 CDD USP_Like 155 269 - -
Cma04g01711 326 MobiDBLite consensus disorder prediction 1 45 - -
Cma04g01711 326 Gene3D HUPs 153 310 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01711 - - - cmos:111458216 584.334
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01711 Cma18g01089 CCT
Cma04g01711 Cma18g01096 CCT
Cma04g01711 Cma18g01096 ECH
Cma04g01711 Cma18g01089 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01393 Cma-Chr1:9871044 Cma04g01711 Cma-Chr4:8609437 1.09E-23 dispersed
Cma04g01711 Cma-Chr4:8609437 Cma11g00224 Cma-Chr11:1122547 7.96E-50 dispersed
Cma13g01043 Cma-Chr13:7961352 Cma04g01711 Cma-Chr4:8609437 6.48E-08 transposed
Cma13g01058 Cma-Chr13:8032668 Cma04g01711 Cma-Chr4:8609437 6.84E-56 wgd
Cma18g01096 Cma-Chr18:8982094 Cma04g01711 Cma-Chr4:8609437 8.10E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g2 Blo01g00462 . . . . Bpe10g00911 Bma14g01718 . Cmo04g01798 Cmo18g01113 . Cma18g01089 . Car18g01010 . Cpe09g00233 Cpe01g01517 . . . . . . . . . . . . . . Cone13ag0891 Cone19ag0890 Cone6ag0514 Cone9ag0526 . Csa05g02523 . . Blo06g00939 Blo11g00801 . . . . . . . . . Cma04g01711 . Car04g01745 . . Cpe07g00095 . . . . . . . . . . . . . . . . . .
Vvi1g6 . . . . . . Bma14g01716 . Cmo04g01798 Cmo18g01118 . Cma18g01096 . Car18g01011 Sed07g2036 Cpe09g00230 . Bhi07g01468 Tan04g0973 Cmetu10g0107 Lac13g0388 Hepe10g1807 . . Cla05g02384 Cam05g2556 Cec05g2588 Cco05g2629 Clacu05g2557 Cmu05g2414 Cre05g2531 Cone13ag0894 . . Cone9ag0527 Lsi04g00353 Csa05g02523 Chy10g01067 Cme10g00347 . . . . . . . Bma06g00744 . . . Cma04g01711 . Car04g01745 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009362 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01711 Cma_Chr04 FPKM 5.629893 5.276971 5.92781 4.887093 2.968193 3.413795 2.327139 0.757933 0.518995 0.675424