Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01711 ATGAAGATGATGGGCCAACACCGTTTCATGAGGAGCACGTTCAGCAATAAGCCCCCACACACCCAAAAGGAATTAAAGAAGAAAAAAAGGAAACCAAACCAACTGAAATCATTACAAAGCAAACAAACAAAGATAAAAGAAACTAAACTATGTGATTCACAATCACAATGTCTCTTTACCGACACAAAGAACTCTGTTCAATCTCAGTCAAATTCTAACGAAAACTCCCAACCCTTTCGTTTTTCTTCTGTTTTTTCTTGTTTTGAAGGAAACCCATCTCCAGAAATGGGGAAAACTGGAACCAAGTTGCCAAGTTTCTGCCTGAACCGGATCCGGCCTCACGTTCGAGTGCCTATTCAGTCCAAATTGGACTCTGTTTCTGTGAAAACCGGACCGAAGAAGGCTGATGATTGTGTAGTGGGTGGTGAGGTTGGAGCTAAGCCAGGGCTGGGAAATGGAAGGAAGATCATGATTGTGATTGATTCCACCATTGAAGCTGAAGGAGCTCTTCAATGGGCTCTGTCTCACACTGTGCAGAATCAAGACAAGATTGTTCTACTCCATGTTATCAAGCCTTCAAGAAAGGGGGAAGGACTAAGCAAGGAGACATCACCAAGAGCATATGAATTGGTTCATTCCATGAGAAATTTATGTCAATTGAAGAGACCAGAGGTGGAAGTCGAAGTTGCAGTGGTGGAAGGAGGGAAAGAGAAAGGGTCGGTGATTGTGGAAGAAGCGAGAAAGCAAGAGGCATCGTTGCTGGTTTTGGGGCAGAAGAAACGGTCCACGACATGGCGGCTTCTGATGGTGTGGGCTGGACACCGATGGGGCGGCGGCGGCGGCGTCGGTGGCGGTGGGGCAGTGGAGTATTGCATACAGAATGCGAGCTGTATGGCGATTGCAGTGAGAAGGAAGAGCAAGAAATTGGGTGGGTATTTGATCACGACAAAGCGACAAAAGGATTTCTGGCTTTTGGCTTAA 981 46.18 MKMMGQHRFMRSTFSNKPPHTQKELKKKKRKPNQLKSLQSKQTKIKETKLCDSQSQCLFTDTKNSVQSQSNSNENSQPFRFSSVFSCFEGNPSPEMGKTGTKLPSFCLNRIRPHVRVPIQSKLDSVSVKTGPKKADDCVVGGEVGAKPGLGNGRKIMIVIDSTIEAEGALQWALSHTVQNQDKIVLLHVIKPSRKGEGLSKETSPRAYELVHSMRNLCQLKRPEVEVEVAVVEGGKEKGSVIVEEARKQEASLLVLGQKKRSTTWRLLMVWAGHRWGGGGGVGGGGAVEYCIQNASCMAIAVRRKSKKLGGYLITTKRQKDFWLLA 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8609437 8610719 + CmaCh04G017110.1 Cma04g01711 292792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01711 326 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 55 326 - -
Cma04g01711 326 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 154 305 - -
Cma04g01711 326 Pfam Universal stress protein family 154 303 IPR006016 -
Cma04g01711 326 CDD USP_Like 155 269 - -
Cma04g01711 326 MobiDBLite consensus disorder prediction 1 45 - -
Cma04g01711 326 Gene3D HUPs 153 310 IPR014729 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01711 Cma18g01089 CCT
Cma04g01711 Cma18g01096 CCT
Cma04g01711 Cma18g01096 ECH
Cma04g01711 Cma18g01089 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01393 Cma-Chr1:9871044 Cma04g01711 Cma-Chr4:8609437 1.09E-23 dispersed
Cma04g01711 Cma-Chr4:8609437 Cma11g00224 Cma-Chr11:1122547 7.96E-50 dispersed
Cma13g01043 Cma-Chr13:7961352 Cma04g01711 Cma-Chr4:8609437 6.48E-08 transposed
Cma13g01058 Cma-Chr13:8032668 Cma04g01711 Cma-Chr4:8609437 6.84E-56 wgd
Cma18g01096 Cma-Chr18:8982094 Cma04g01711 Cma-Chr4:8609437 8.10E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01711 - - cmos:111458216 584.334