Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01714 ATGGCATCAAGATCACCCACAAACTTTTTGGGCCTGGCTTCTGGAGACTTACTGGATGTTCCTCGTATGCCTAGGTCCTTGCCACGGGTAATGACTGTTCCTGGAATTATTTCTGAATTGGATGATTATGGGAGTAATGACGGGGATTCGGAGTCTTCATCTGTATGCTGTGAGCGGAAAATCATAGTTATGAATATGTTGCCCTTGCAAGCTAAAAAAGATGGTCAATCTGGCAAATGGTGCTTCAGTTTAGACGAGGATTCAATTTTATTGCAGCTAAAGGATGGGTTTTCACCTGAGATGGAGGTTATATACATAGGTTCCCTCAAGGTTGAAATCGACGCCAACGAACAGGAAGAGGTTGCTCAGAAGTTGTTCGACAATTTTAACTGTGTGCCTACATTTCTTCCTTATGATCTACAGAAGAAATTTTATCTTGGATTCTGTAAACAGCAGCTATGGCCCTTATTCCATTACATGCTACCCATGTGCCCAGAGCACGGTGATCGCTTTGATCGGCAGCTTTGGCAAGCCTATGTTTCTGCAAATAAACTATTTGCTGACAAGGTGATGGAAATCATCAATTCTGAGGAAGATTCTGTTTGGGTTCATGATTATCATTTGATGCTTCTTCCAACGTTCCTGAGGAAGCGTTACAATCGAGTTAAACTCGGATTTTTTCTGCATAGCCCGTTTCCGTCTTCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGCCTATTAAACTGTGATTTAGTTGGTTTTCATACGTTTGATTATGCTCGCCACTTCCTCTCCTGCTGCAGCAGAATGTTGGGCTTGGACTATGAATCGAAGCGGGGACATATTGGACTAGATTATTATGGCCGCACGGTATATATCAAAATTCTGCCTGTAGGCATTCACATGGGTCGGCTGGAATCGGTGATGAATCTTCCATCTACATTTGCTAAAGTCAGAGAAATTCGAGATCAATTCATGGGGAAGAAATTAATACTTGGTATTGATGACATGGACATTTTCAAGGGTATAAGCCTGAAGCTTCTCGCTGTGGAACAGCTCTTACGGCAACGTCCTGAGTTGCGGGGAAAAATAATCCTAGTTCAAATAGTGAACCCTGCAAGGGGTTCAGGGAAAGACGTTTATGAAGCTCAGAAGGAAACCTACGCGGCTGCTGAAAGGATCAATGAAGCTTACGGTTCAAATAACTACAAACCAGTAATTCTGATTGACCGCCCTGTTCCACGTTTTGAGAAGACTGCTTATTATGCTTTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGTATGAATTTGGTTCCATACAAGTATATTGTCTGTAGGCAAGGAACTCCTCTTATGGATGAGGCTATGGGCTTACAAATTGGTTCCCCTCGGACGAGTATGCTTGTAGTGTCTGAGTTTATTGGTTGCTCACCTTCTTTAAGTGGAGCCATCAGGGTTAACCCTTGGGACATTGATGCTGTTGCCGATGCCTTGGAACTAGCCATGACCTTGCAGGAGTCCGAGAAGCAGCTGCGGCATGAGAAACATTATCGATATGTCAGTACCCACGATATAGGGTATTGGTCTCGTAGTTTTATGCAAGATTTAGTCAGAGCATGTCAAGATCACTATAGTAAACGGTGCTGGGGAATTGGTTTGGGTCTGCGTTTTAGAGTTGTTTCCCTTTCTCCTGAGTTTAGGAAGTTAACAATTGATCACATTGTCTCAGCTTATAAAAGAACTCATAGAAGGGCGATATTTTTGGATTACGATGGCACTATCATTCCACAAAGCTCTATAATTAAGATACCGAGCCCTGAAATTATCTCTGTCTTGACTACGCTTTGCAATGATCCCTGTAATACCGTGTTCATTGTTAGTGGGAGGGGGAGAAGTTCTTTAGGTGAGTGGTTTGCCTCTTGCGAGTTGTTGGGGATTGCAGCAGAACATGGGCACTTCATAAGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCCGTTGTCTTCTGATCTGGACTGGATTAAAATTGTAGAGCCAGTGATGAGATTATACATGGAAGCAACAGATGGGTCGAGCATAGAACCCAAAGAGAGTGCTTTAGTCTGGCATCACCAAGATGCCGATTCGGACTTCGGATCCTGTCAAGCTAAGGAGTTGCTGAACCATCTAGAAAATGTACTTGCCAATGAACCAGCCGTCGTTAAAAGGGGCCAACATATTGTTGAAGTGAAGCCACAGGGAGTAAGCAAAGGGCTGGTCGCAGAAAAGGTTCTGTCGAGGATGGTGGATAGTGGAAGACCACCTGATTTTGTAATGTGCATTGGAGATGACAGATCAGATGAAGATATGTTCGAGAGCATATTAAGCACCGTGTCCAGTCCCTCACTGCCTTCCGCTCCAGAAATTTTTGCCTGCACTGTTGGACGAAAGCCAAGCAAGGCAAAATTTTACCTCGATGATACTTCCGATGTCGTAAGATTGCTGCAATGCCTCGCTTCTTCGTCATGTCCAAGATCTCGGCAACTACCACAGATGCGTGTTTGTTTTGAGAGTGTTTTTTGA 2583 43.9 MASRSPTNFLGLASGDLLDVPRMPRSLPRVMTVPGIISELDDYGSNDGDSESSSVCCERKIIVMNMLPLQAKKDGQSGKWCFSLDEDSILLQLKDGFSPEMEVIYIGSLKVEIDANEQEEVAQKLFDNFNCVPTFLPYDLQKKFYLGFCKQQLWPLFHYMLPMCPEHGDRFDRQLWQAYVSANKLFADKVMEIINSEEDSVWVHDYHLMLLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTFAKVREIRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQRPELRGKIILVQIVNPARGSGKDVYEAQKETYAAAERINEAYGSNNYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPLMDEAMGLQIGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAMTLQESEKQLRHEKHYRYVSTHDIGYWSRSFMQDLVRACQDHYSKRCWGIGLGLRFRVVSLSPEFRKLTIDHIVSAYKRTHRRAIFLDYDGTIIPQSSIIKIPSPEIISVLTTLCNDPCNTVFIVSGRGRSSLGEWFASCELLGIAAEHGHFIRWGGTSEWETSPLSSDLDWIKIVEPVMRLYMEATDGSSIEPKESALVWHHQDADSDFGSCQAKELLNHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVRLLQCLASSSCPRSRQLPQMRVCFESVF 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8627964 8631134 - CmaCh04G017140.1 Cma04g01714 292795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01714 860 Gene3D Glycogen Phosphorylase B; 317 529 - -
Cma04g01714 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 847 IPR001830 GO:0003824|GO:0005992
Cma04g01714 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Cma04g01714 860 CDD HAD_TPP 592 833 - -
Cma04g01714 860 SUPERFAMILY HAD-like 591 839 IPR036412 -
Cma04g01714 860 Gene3D - 590 714 IPR023214 -
Cma04g01714 860 Gene3D - 719 849 IPR023214 -
Cma04g01714 860 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 793 IPR006379 -
Cma04g01714 860 Gene3D Glycogen Phosphorylase B; 48 316 - -
Cma04g01714 860 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 847 - -
Cma04g01714 860 TIGRFAM T6PP: trehalose-phosphatase 589 839 IPR003337 GO:0003824|GO:0005992
Cma04g01714 860 CDD GT20_TPS 61 543 IPR001830 GO:0003824|GO:0005992
Cma04g01714 860 Pfam Trehalose-phosphatase 594 829 IPR003337 GO:0003824|GO:0005992
Cma04g01714 860 Pfam Glycosyltransferase family 20 59 543 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01714 Cma-Chr4:8627964 Cma10g00135 Cma-Chr10:613343 0 dispersed
Cma04g00288 Cma-Chr4:1415601 Cma04g01714 Cma-Chr4:8627964 0 transposed
Cma11g00105 Cma-Chr11:560642 Cma04g01714 Cma-Chr4:8627964 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01714 K16055 - csv:101212688 1638.24