Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01717 ATGTCCAATGACTTCCGAGCATCGGAGCTCCGCGACTACGGGCAGCACCGTTTTCCTACCTTATCGCCGGCTGATCTGTTCGTACTTTTTGACGAATCCAAGAGATCTTTTTTCTTGGAGCTTCTGGGCTCCTTCGATACAATGACTCGAGTTTACATTGGCAATCTGGATCCACGTGTTACGGAGAGGGAGCTTGAAGATGAATTTCGAATGTTCGGTGTTCTGAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTTTAGATGCAATACAAGCATTGGATGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCGGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGTGCAGGAGGTGGTTTGCGCCGTAGTCCTTCTCCTCGGCGCCGCAGGAGTCCAAGCTATGAAAGATATGGTCGCAGGAGTAACAGTCCTCGTGGTAAAAGATCCCCACCAAGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGCAGCTACAGCAGATCCCCTCCACCCCGACATGCTCGTCGTGCTTCACCTTATGCTAATGGAGATTGA 708 51.41 MSNDFRASELRDYGQHRFPTLSPADLFVLFDESKRSFFLELLGSFDTMTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGAGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARRASPYANGD 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8643578 8649315 + CmaCh04G017170.1 Cma04g01717 292798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01717 235 MobiDBLite consensus disorder prediction 157 235 - -
Cma04g01717 235 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 120 IPR000504 GO:0003723
Cma04g01717 235 CDD RRM_SRSF3_like 50 118 - -
Cma04g01717 235 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 39 233 - -
Cma04g01717 235 Gene3D - 44 143 IPR012677 -
Cma04g01717 235 ProSiteProfiles Zinc finger CCHC-type profile. 144 160 IPR001878 GO:0003676|GO:0008270
Cma04g01717 235 MobiDBLite consensus disorder prediction 179 193 - -
Cma04g01717 235 SMART rrm1_1 50 116 IPR000504 GO:0003723
Cma04g01717 235 MobiDBLite consensus disorder prediction 113 138 - -
Cma04g01717 235 Gene3D - 144 187 - -
Cma04g01717 235 SUPERFAMILY Retrovirus zinc finger-like domains 127 164 IPR036875 GO:0003676|GO:0008270
Cma04g01717 235 SUPERFAMILY RNA-binding domain, RBD 46 139 IPR035979 GO:0003676
Cma04g01717 235 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1 39 233 - -
Cma04g01717 235 SMART c2hcfinal6 144 160 IPR001878 GO:0003676|GO:0008270
Cma04g01717 235 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 108 IPR000504 GO:0003723
Cma04g01717 235 MobiDBLite consensus disorder prediction 194 221 - -
Cma04g01717 235 Pfam Zinc knuckle 144 159 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01717 K12896 SRSF7, SFRS7; serine/arginine-rich splicing factor 7 - csv:101213165 231.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01717 Cma18g00809 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01578 Cma-Chr1:10902600 Cma04g01717 Cma-Chr4:8643578 7.35E-62 dispersed
Cma04g01717 Cma-Chr4:8643578 Cma09g00533 Cma-Chr9:2376770 1.61E-58 dispersed
Cma18g00809 Cma-Chr18:7074572 Cma04g01717 Cma-Chr4:8643578 1.56E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g741 . . . . . Bpe10g00832 . Bma15g00192 . Cmo18g00811 . Cma18g00809 . Car18g00740 . Cpe09g00496 Cpe01g01520 . . . . . . . Cla05g02528 Cam05g2718 Cec05g2749 Cco05g2790 Clacu05g2720 Cmu05g2574 Cre05g2688 Cone13ag1031 Cone19ag1022 . . Lsi04g00534 Csa05g02349 Chy10g00916 Cme10g00510 Blo06g00870 . . . . . . . . . . Cma04g01717 . Car04g01749 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001098 3 1 1 2 2 1 5 2 2 2 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 2 7 5 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01717 Cma_Chr04 FPKM 36.279659 33.813423 48.719723 48.538914 72.872452 87.576324 71.988258 53.013168 55.343239 51.247593