Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01719 ATGTCTGCGGAACATTTCGTTGGGTCGGCGGCCGATGCGGCGGCGAAGAAACCTGAGATTGAGAATGGAGTATCCGCCTCACAGCCCGATTCTATTTCCTCTGTAATTCCTGGATGGTTTTCTGAAATTAGCCCATTGTGGCCTGGAGAGGCCCATTCCTTGAAGGTGGAGAAGGTTTTGTTTCAAGGGAAGTCTGATTACCAGAACGTTTTGGTATTTCAGTCATCAACTTATGGGAAGGTTCTGGTTTTGGATGGGGTGATTCAGCTTACAGAGAGAGATGAATGTGCTTACCAAGAGATGATCACCCACCTTCCACTTTGCTCAATTCCAAACCCCAAAAAGGTTCTCGTTATCGGTGGAGGAGATGGCGGTGTTTTGCGAGAGGTGGCTCGCCATTCATCTGTTGAGCAGATAGATATCTGTGAAATCGACAAGATGGTTTCCAAAGAATTTTTCCCTCGCGTAGCTGTCGGGTTTGAGGATCCTCGTGTCACTCTTCACATTGGTGATGGCGTCGCATTTCTGAAGGCTGTTCCTGAAGGCACTTATGATGCAGTGATAGTGGATTCTTCTGATCCTATTGGTCCAGCACAAGAGCTCTTTGAGAAGCCTTTCTTTGCTTCAGTTGCCAAAGCTCTTCGACCAGGAGGTGTTGTGTGTACTCAAGCAGAGAGCATTTGGCTTCACATGCATATCATTGAAGACATTGTGACAAACTGCCGCCAAATATTCAAAGGCTCTGTCAACTATGCATGGACTACAGTTCCTACATATCCAAGCGGAGTGATTGGGTTTATGCTCTGCTCAACTGAGGGGCCTCCTCTTGATTTCAAGCATCCAGTCAACCCAGTAGAGGTGAACGGTATCGACACCGTGAAGAGTCCGCTCAAGTTTTACAACTCGGAGATTCATACAGCAGCTTTCTGTTTGCCTTCTTTTGCGAAGAAGATCATCGATTCAAAAGCAAAATGA 975 46.67 MSAEHFVGSAADAAAKKPEIENGVSASQPDSISSVIPGWFSEISPLWPGEAHSLKVEKVLFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVSKEFFPRVAVGFEDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEDIVTNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPLDFKHPVNPVEVNGIDTVKSPLKFYNSEIHTAAFCLPSFAKKIIDSKAK 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8650792 8653790 - CmaCh04G017190.1 Cma04g01719 292800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01719 324 Gene3D Vaccinia Virus protein VP39 90 324 IPR029063 -
Cma04g01719 324 PANTHER SPERMIDINE/SPERMINE SYNTHASE 21 323 IPR001045 GO:0003824
Cma04g01719 324 Pfam Spermidine synthase tetramerisation domain 38 92 IPR035246 -
Cma04g01719 324 Hamap Polyamine aminopropyltransferase [speE]. 38 320 IPR001045 GO:0003824
Cma04g01719 324 Gene3D Spermidine synthase, tetramerisation domain 31 89 IPR037163 -
Cma04g01719 324 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 37 271 IPR030374 -
Cma04g01719 324 PANTHER SPERMIDINE SYNTHASE-RELATED 21 323 - -
Cma04g01719 324 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 35 320 IPR029063 -
Cma04g01719 324 PIRSF Spermidine_synth 27 324 IPR030668 GO:0006595
Cma04g01719 324 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 116 129 IPR030373 -
Cma04g01719 324 Pfam Spermine/spermidine synthase domain 95 274 - -
Cma04g01719 324 CDD AdoMet_MTases 115 223 - -
Cma04g01719 324 TIGRFAM speE: spermidine synthase 39 314 IPR001045 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01719 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101213410 574.704
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01719 Cma18g00807 CCT
Cma04g01719 Cma18g00807 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01719 Cma-Chr4:8650792 Cma10g00133 Cma-Chr10:605951 3.11E-150 dispersed
Cma12g00002 Cma-Chr12:6511 Cma04g01719 Cma-Chr4:8650792 3.62E-28 wgd
Cma18g00807 Cma-Chr18:7069542 Cma04g01719 Cma-Chr4:8650792 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01719 Cma_Chr04 FPKM 42.253014 44.875294 101.181961 100.071991 19.817888 16.965025 20.684013 157.319626 147.900406 156.899811