Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01727 ATGAAAGACGCCACGTGGACCAATGATGCGTCACCTGCTGGACTCGCAGCTGAAAGAGAAACAGGCAATTTCTTGTTCTTGATGGCAAAGCATACTCCAATTATCTGTTCGTCGGAAAATCTGGAAGATAAGCCTGGAAGCTTTCAACTTCCTCGCGATCTTTTTTCTACTTCAATGGCGGACTCCTCCTCCTCATCCCCTGCGACCCTCGATTCAAATCCTCAAGCTGCCGAGCCTGAAAACCCAAATTCCCAGGCCAACAAAGCCGAATCTGCCGCTTCTTCTTTTCCTCCACCGCAATCACTACCACCAACATCGCTTTCGGTCGGAATGAACCCTACCATGCATTCACCCTTGGTGTCAACGCCGCAACCACCTCCTTCTTTATCTTATGTCCCGGCGGGCGTTCCTCCGACAGCTCCGTCTTTTCGGCCGGTTCCTTTCTCAGCTCATCAGTTCTCGCCCATGCCCGGCGCTGGCATGCTGAATCCAAACTATTCTAATATTGGGGTTCAGCCTCCGGGTGTTGGCTCGGTTACGGCGCCTGCTCCTGGTATGGCAAGTGGTGGTACGGGAGCTGTTCCAGTTCCAGTACCACAACCGATGATGGCTTATCAAGTTCCACCAGGTCAGATTCCGAATCCGGTGATGAGGCCGTACGCTACTATGCCAAATGGTTTCGCAGCTGTGCCAACTGCTACTCCTCAAGGGGCCTTTCCTATTCCTGGTGTTCCTCGATTTCCTTCCCCATATCATGCTATGATTAGGACACCCTTTCCTCCACGGCCACCTGGTGCTATGGGCATGGTTCCAGCTATGCCACGACCTCCTGTTCCTGGGGTTCCTGGTGTTCGTCCAATTATCCCTCCTGTGGTTAGGCCTGCTGTTCTCCCAAGTGTTACACCAGCCGAAAAACCACAAACTACGATTTACATTGGCCGAATTGCACAATCAGTGGGAAATGATTTCATGCTGTCCCTTCTTCAGCTATGTGGACCAGTGAAGAGCTGGAAACGAGCCCAAGATCCTACGGATGGAACTCCTAGAACCTTTGGATTCTGCGAGTTTGAGTCTGCTGAAGGCGTTCTTCGTGCTCTACGATTACTGACAAAGTTAAACATTGATGGACAAGAACTCGTGCTAAAAGGTACTCAGGCAACAAGAGATTATCTTAAGCGTTATGTTGAGAAGAAAGCTGAGAACTCAAAGAAACAGGAAGAAACAAAACTTTCAGAGACTAAGGTCGAAGAAACAGACACAGAAAATGTGGCTAAAAATGAAACTTCAAAGCCCCCTGCAGAGGATTCAAAGGAGGATCAGGATTCAGGGGAAAAAGAAGATCATTACATTGCCTGTTCTGCAGTTTTAAGTGATGAAGATAGAGATGCTGATCGAGAGGTATCGGAAAAACTTACTAATGCACTGGAGGAGAGGTTGAAGTCGAGACCTTTGCCACCACCTCCTCTACTGACAGCCACTGATGTCTCTGGTAATTCAAGTGCAGAACCATCTGTTAAAATGAAAGATGGTGAAGCTGACTCTGATATTTTGAAAAGTGATGCAGCTGAGGATAGAAATGACGATGACACAACTAGTGACAATAAACTAACTAGTGAGCATGACAAGCCTGAAACAAGCTCACCTGACAGAAGTAGAAGGTATGACAGGAGAAGTCGAGAACGAGACAGGGAGAGGGATCTGAAAAGGGACAAGGAGCGGGAAATTGAGAGATATGAAAGAGAGACAGAGCGGGAGCGAGCTAGGAAAGAGAGGGAACAAAGAAGAAAGTTTGAGGAGTCTGAGCGACAGTATGAAGAATGTCTTAAAGAATGGGAATATCGAGAAAGAGAGAGAGAAAAGCAAAGACAGTACGAGAAGGAGAGGGAGAAAGAAAAAGAGCGTAAAAGGAAGAAGGAGATATTGTATGATGAAGATGATGAGGATGATGATTCCAGAAGAAAATGGCGGCGAGGTGCTCTGGAGGAAAAGAGGAAGAAGAGGTCTAGAGAAAAGGAAGATGATTCGGTAGATAGACAGAAAGAGGAAGAAGAAATTGCTGAGGCCAAGAGGAAGGCTGAGGAGGAACAGCAGCTGAAACAGAAAGATCTACTGAAGACTCAATCTGGTCAGATGACGAGTGTTGATGAGAAAACTGTTCTTGCTGAAGAATCCGCTAATGAGGTTGAGGTTATGGATTCTGAACGTGATCCTGAGCTTGATTCTAGCTGCGATAACTATACAGGGGATGGGATCTTACAAAATGGTAGTGGTGATGAATTAAATACGACTCGACAGAGTGGAGGCTTGCCTGCAAAAAGATTAGGATTTGGTTTAGTGGGATCTGGAAAACGGACTGCTGTACCTTCCGTCTTTCATGAGGAGGATGATGAAGCTCAGAAAGAGAAGAAGATGAGGCCACTGGTTCCAATTGATTACTCAGCTGAGGAACTCCAGGCTGTGCAACCTGCCAGTACTGGGGCTTTGCCGCCAAATTTAGCTGCAGCAGCGGAGTTTGCAAAACATATATCAAATGTTAATTCCAAAGAGGAGAAGCCTGACAGTGAACGGGAGCAAGGAAGACGTTCCAATGAAAAGTCTAGTCGAGATAGAGACCGAAATGATGAGGAGGCCTATCGCAGCAAAGATGAGAACAAGACAATAGACAGAGACAGGGAGCGAGAGCATGTTTTGGATAAAGTAAAAATACCTGATAACAAAAAGCTTTTGGACGCAAAACAGTTGATCGATATGATACCAAAGACGAAGGAGGAGTTATTCTCATATGAAATAAATTGGGCTATTTACGAAAAGCATGCACTACACGAGAGAATGAGACCCTGGATTTCAAAAAAGATAACAGAGTTTTTGGGGGAGGAGGAAACTACTCTTGTTGATTACATTGTTTCAAGTACTCAGGAACACGTAAAGGCATCCCAAATGCTGGAGCTGCTTCAGTCAATTTTGGATGAAGAAGCTGAAATGTTTGTTCTGAAGATGTGGAGAATGCTGATCTTCGAAATAAAAAAGGTTTCTTTTATGGGAGATATGTTAATGACCCAAAATCAAGCAAGAACAGAGTCAATAGCCAGACGTGAAACCAAGAACAAAGACGTCAAAATCCCAGCAACCTCTGGCATGTCGAAATGGCACCAATTTGGGCGCGTAGATCATGGCGACAGGAGCCAAATAGCTAGCGCCTAG 3201 45.92 MKDATWTNDASPAGLAAERETGNFLFLMAKHTPIICSSENLEDKPGSFQLPRDLFSTSMADSSSSSPATLDSNPQAAEPENPNSQANKAESAASSFPPPQSLPPTSLSVGMNPTMHSPLVSTPQPPPSLSYVPAGVPPTAPSFRPVPFSAHQFSPMPGAGMLNPNYSNIGVQPPGVGSVTAPAPGMASGGTGAVPVPVPQPMMAYQVPPGQIPNPVMRPYATMPNGFAAVPTATPQGAFPIPGVPRFPSPYHAMIRTPFPPRPPGAMGMVPAMPRPPVPGVPGVRPIIPPVVRPAVLPSVTPAEKPQTTIYIGRIAQSVGNDFMLSLLQLCGPVKSWKRAQDPTDGTPRTFGFCEFESAEGVLRALRLLTKLNIDGQELVLKGTQATRDYLKRYVEKKAENSKKQEETKLSETKVEETDTENVAKNETSKPPAEDSKEDQDSGEKEDHYIACSAVLSDEDRDADREVSEKLTNALEERLKSRPLPPPPLLTATDVSGNSSAEPSVKMKDGEADSDILKSDAAEDRNDDDTTSDNKLTSEHDKPETSSPDRSRRYDRRSRERDRERDLKRDKEREIERYERETERERARKEREQRRKFEESERQYEECLKEWEYREREREKQRQYEKEREKEKERKRKKEILYDEDDEDDDSRRKWRRGALEEKRKKRSREKEDDSVDRQKEEEEIAEAKRKAEEEQQLKQKDLLKTQSGQMTSVDEKTVLAEESANEVEVMDSERDPELDSSCDNYTGDGILQNGSGDELNTTRQSGGLPAKRLGFGLVGSGKRTAVPSVFHEEDDEAQKEKKMRPLVPIDYSAEELQAVQPASTGALPPNLAAAAEFAKHISNVNSKEEKPDSEREQGRRSNEKSSRDRDRNDEEAYRSKDENKTIDRDREREHVLDKVKIPDNKKLLDAKQLIDMIPKTKEELFSYEINWAIYEKHALHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKKVSFMGDMLMTQNQARTESIARRETKNKDVKIPATSGMSKWHQFGRVDHGDRSQIASA 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8678384 8684961 - CmaCh04G017270.1 Cma04g01727 292808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01727 1066 Coils Coil 671 705 - -
Cma04g01727 1066 SUPERFAMILY PWI domain 938 1022 IPR036483 GO:0006397
Cma04g01727 1066 MobiDBLite consensus disorder prediction 39 133 - -
Cma04g01727 1066 MobiDBLite consensus disorder prediction 746 768 - -
Cma04g01727 1066 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 379 IPR000504 GO:0003723
Cma04g01727 1066 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 87 1011 - -
Cma04g01727 1066 SUPERFAMILY RNA-binding domain, RBD 302 381 IPR035979 GO:0003676
Cma04g01727 1066 Gene3D - 300 422 IPR012677 -
Cma04g01727 1066 MobiDBLite consensus disorder prediction 119 133 - -
Cma04g01727 1066 MobiDBLite consensus disorder prediction 398 809 - -
Cma04g01727 1066 ProSiteProfiles PWI domain profile. 923 1020 IPR002483 GO:0006397
Cma04g01727 1066 Coils Coil 396 416 - -
Cma04g01727 1066 Coils Coil 614 641 - -
Cma04g01727 1066 MobiDBLite consensus disorder prediction 51 96 - -
Cma04g01727 1066 MobiDBLite consensus disorder prediction 788 809 - -
Cma04g01727 1066 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 87 1011 - -
Cma04g01727 1066 MobiDBLite consensus disorder prediction 702 719 - -
Cma04g01727 1066 Gene3D PWI domain 901 1012 - -
Cma04g01727 1066 Pfam PWI domain 943 1006 IPR002483 GO:0006397
Cma04g01727 1066 Coils Coil 561 610 - -
Cma04g01727 1066 MobiDBLite consensus disorder prediction 398 477 - -
Cma04g01727 1066 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 393 IPR000504 GO:0003723
Cma04g01727 1066 CDD RRM_RBM25 308 391 IPR034268 -
Cma04g01727 1066 SMART rrm1_1 309 382 IPR000504 GO:0003723
Cma04g01727 1066 MobiDBLite consensus disorder prediction 506 701 - -
Cma04g01727 1066 MobiDBLite consensus disorder prediction 720 742 - -
Cma04g01727 1066 MobiDBLite consensus disorder prediction 843 890 - -
Cma04g01727 1066 SMART pwi_2 936 1009 IPR002483 GO:0006397
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01727 K12822 RBM25, S164; RNA-binding protein 25 - csv:101214372 1009.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01727 Cma18g00802 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00802 Cma-Chr18:7050544 Cma04g01727 Cma-Chr4:8678384 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01727 Cma_Chr04 FPKM 24.081472 27.00355 26.235731 27.320961 36.524258 35.304214 35.056938 32.588753 30.358353 28.387554