Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01730 ATGGAAGCGACTCTCGCATCCACACTTTCGCAACTCAAATCTCCTTTCCAGTCTCTCTCTTCCAAATTGTGGCCTTCAGTTTCCCTTACTTCCCGGGAAAGTAAACGGAAGACGATTAGGTACGCTCCGGCAACGGTGAGTTTGCCGGCTTCTCGCATTCGTCTCAGAGTGTTCGCCAATTCGCAATCGGCGCCTGCTTCTGCCGTGACGTCGGAAGTGTCGTCGGTGCCTTTGGAAATGAAGGCGTGGGTGTACGGTGAGTATGGAGGCGTCGATGTGTTGAAATTTGATAGCAGTGTATCGGTGCCTGAAGTGAAGGAGGATCAGGTTCTGATTAAGGTCGTTGCGGCGGCGCTTAACCCTGTCGATGCTAAAAGGAGGCAGGGGAAGTTCAAGGCCACGGATTCTCCTCTTCCGACAGTTCCAGGATATGATGTAGCAGGTGTGGTGGTGAAGGTGGGAAGTCAGGTAAAGGAGCTAAAAGAAGGGGACGAAGTATATGGCAACATCAACGAGAAAGCCCTCGATGGCCCCAAACAGTTCGGTTCTCTTGCAGAGTACACTGCTGTAGAGGAAAAATTATTAGCCTTAAAACCCAAGAATATTGATTTTGTTCAGGCCGCTGGGTTGCCTCTGGCTATTGAAACAGCCTACGAAGGTCTGGTAAGAACCAACTTTTCTGCTGGCAAATCAATTCTCGTTCTCAACGGTACTGGTGGAGTTGGAAGCCTAGTCATTCAGATAGCAAAACATGTGTTTGGAGCTTCAATAGTTGCAGCCACTTCGAGCACTGGAAAGTTAGAGTTCTTGAAAAGTTTGGGTGTGGATTTAGCCATTGATTATACCAAGGAGAACATCGAAGATTTGGCCGAAAAATTTGATGTAGTCTACGATGCAATTGGGCAGTGTGATAAGGCGGTGAAAGTAGTGAAAGAAGGTGGCAGAGTCGTGGTGCTGACAGGCGCAGTGACAGAGCCTGGTTTCAGATTTGTGGTCACTTCAGATGGAGCTGTTCTGAAGAAACTGAACCCATTCCTGGAAAGCGGGAAGGTGAAGCCGATCGTGGACCCAAAAGGACCTTTTCCATTCTCTAAGGTCGCAGAGGCCTTCTCATATGTTGAAAGCAGCCGAGCCACTGGAAAAGTAAACTTTAGAAAGAGGCAAGTTTTGCAGAAACAGAGAGCAGAGAGAGACAGAGCTTCCTCCAAGAATATGGTACCACCAGAGTGGAAAGCTTAA 1239 48.35 MEATLASTLSQLKSPFQSLSSKLWPSVSLTSRESKRKTIRYAPATVSLPASRIRLRVFANSQSAPASAVTSEVSSVPLEMKAWVYGEYGGVDVLKFDSSVSVPEVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKALDGPKQFGSLAEYTAVEEKLLALKPKNIDFVQAAGLPLAIETAYEGLVRTNFSAGKSILVLNGTGGVGSLVIQIAKHVFGASIVAATSSTGKLEFLKSLGVDLAIDYTKENIEDLAEKFDVVYDAIGQCDKAVKVVKEGGRVVVLTGAVTEPGFRFVVTSDGAVLKKLNPFLESGKVKPIVDPKGPFPFSKVAEAFSYVESSRATGKVNFRKRQVLQKQRAERDRASSKNMVPPEWKA 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8700030 8704022 + CmaCh04G017300.1 Cma04g01730 292811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01730 412 MobiDBLite consensus disorder prediction 389 412 - -
Cma04g01730 412 Gene3D - 221 335 - -
Cma04g01730 412 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 355 IPR036291 -
Cma04g01730 412 SMART PKS_ER_names_mod 89 384 IPR020843 GO:0016491
Cma04g01730 412 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 37 383 IPR044626 GO:0016628
Cma04g01730 412 CDD MDR_like_2 80 382 - -
Cma04g01730 412 Gene3D - 87 382 - -
Cma04g01730 412 Pfam Alcohol dehydrogenase GroES-like domain 108 170 IPR013154 -
Cma04g01730 412 SUPERFAMILY GroES-like 77 234 IPR011032 -
Cma04g01730 412 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 37 383 - -
Cma04g01730 412 Pfam Zinc-binding dehydrogenase 240 321 IPR013149 -
Cma04g01730 412 Coils Coil 412 412 - -
Cma04g01730 412 MobiDBLite consensus disorder prediction 389 404 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01730 K18980 EO, FaQR; 2-methylene-furan-3-one reductase [EC:1.3.1.105] - csv:101215501 597.816
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01730 Cma-Chr4:8700030 Cma04g02713 Cma-Chr4:18319313 1.32E-139 dispersed
Cma15g00181 Cma-Chr15:827833 Cma04g01730 Cma-Chr4:8700030 1.05E-25 transposed
Cma16g00410 Cma-Chr16:2037720 Cma04g01730 Cma-Chr4:8700030 2.37E-34 transposed
Cma15g00332 Cma-Chr15:1531226 Cma04g01730 Cma-Chr4:8700030 1.09E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g707 . . . . . . Bma14g01793 . . . . . . . Sed01g1019 . Cpe01g01529 Bhi07g01725 Tan04g1230 Cmetu09g1229 Lac13g0203 Hepe10g1643 . . Cla05g02539 Cam05g2729 Cec05g2760 Cco05g2800 Clacu05g2730 Cmu05g2583 Cre05g2697 Cone13ag1038 . . . Lsi04g00547 Csa05g02339 Chy10g00906 Cme10g00520 . Blo11g00915 Bda07g01601 . . . . . . Cmo04g02843 . Cma04g01730 . Car04g01763 . . . . . . . . . . . . . . . . . . . Chy09g00330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011084 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01730 Cma_Chr04 FPKM 0.617781 1.406888 48.360867 46.013565 265.677002 251.466751 265.83963 52.087315 52.850857 52.221325