Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01731 ATGGGTAATCCAAATTGTAATTCAGACCTCATCCATCGCTTTCCTTTCCCTATCTCCCCATCTTCATCTTCCTCTTCCTCTTTCCTTGTCCGCCATTTCCACCAGCTTTCTTCAACCAAGCAGGCAGCCACAACCTCACTGCAACAATGGCCTCCAGCTTTAAGAATTGCATGCTTTGCTGCTCGTCCAAGGTTACGATTTTCCCACACAATTTTAAAGGAAGACATGGCGGAAGAGTCGTACGAGGAAGCGATTGCCGGACTGACAAAGCTTCTCAGTGAGAAAGCGAATCTTCAGGAGGCCGCCGCCGTAAGGATCCGGCAAATAACTGCCGAGTTGGCCGGGTCCACCGCCGAGTCTGATGGGTTCGACGCTGTGGATAGGATCAAAACCGGGTTCACACATTTCAAGAAATCCAAATTCGAGACGAATCCTGATCTGTTTGGTCAACTAGCGAAAGGGCAGAGCCCGAAGTTTTTGGTATTTGCGTGTTCGGATTCCCGAGTTTGCCCTTCACACATACTCAATTTCCAACCTGGGGAGGCCTTTGTGGTCCGAAACATCGCCAGCATGGTCCCACCATTTGACACGACTAAATATTCTGGGACGGGAGCTGCAATTGAATATGCTATATTGCATCTTAAGGTGGAGAATATAGTTGTGATTGGACATAGCTGCTGCGGTGGCATTAAGGGCCTGATGTCCATCCCAACCGATGGAACTCTTTCCAGTGAGTTCATTGAAAACTGGGTGAAAATATGCACTCCTGCCAAAGCTAAGGTCCAATTAGGTTTCACCGACTTGAGCTTTGAAGACAAATGCACAAACTGCGAGAAGGAAGCTGTGAATGTTTCCCTTGGAAACTTGCTGACATACCCTTTTGTAAGAGAAGCTGTCATCAACAAGCAACTGTTCATAAGGGGTGCACATTACAACTTTGTCTCTGGAGATTTTGAGCTGTGGAATCTTGACTTTAATATTTCTCCTTCTCTAGTTGTCTGA 1002 46.91 MGNPNCNSDLIHRFPFPISPSSSSSSSFLVRHFHQLSSTKQAATTSLQQWPPALRIACFAARPRLRFSHTILKEDMAEESYEEAIAGLTKLLSEKANLQEAAAVRIRQITAELAGSTAESDGFDAVDRIKTGFTHFKKSKFETNPDLFGQLAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIASMVPPFDTTKYSGTGAAIEYAILHLKVENIVVIGHSCCGGIKGLMSIPTDGTLSSEFIENWVKICTPAKAKVQLGFTDLSFEDKCTNCEKEAVNVSLGNLLTYPFVREAVINKQLFIRGAHYNFVSGDFELWNLDFNISPSLVV 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8703199 8707858 - CmaCh04G017310.1 Cma04g01731 292812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01731 333 Coils Coil 81 101 - -
Cma04g01731 333 SUPERFAMILY beta-carbonic anhydrase, cab 125 328 IPR036874 GO:0004089|GO:0008270
Cma04g01731 333 CDD beta_CA_cladeB 132 321 IPR045066 GO:0004089|GO:0008270
Cma04g01731 333 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 164 171 IPR015892 GO:0004089|GO:0008270|GO:0015976
Cma04g01731 333 Gene3D Carbonic anhydrase 116 333 IPR036874 GO:0004089|GO:0008270
Cma04g01731 333 PANTHER CARBONIC ANHYDRASE 37 332 IPR001765 GO:0004089|GO:0008270
Cma04g01731 333 PANTHER BETA CARBONIC ANHYDRASE 2, CHLOROPLASTIC 37 332 - -
Cma04g01731 333 SMART Pro_CA_2 152 322 IPR001765 GO:0004089|GO:0008270
Cma04g01731 333 Pfam Carbonic anhydrase 160 317 IPR001765 GO:0004089|GO:0008270
Cma04g01731 333 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 208 228 IPR015892 GO:0004089|GO:0008270|GO:0015976
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01731 K01673 cynT, can; carbonic anhydrase [EC:4.2.1.1] - csv:101215090 468.003
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01731 Cma18g00800 CCT
Cma04g01731 Cma18g00800 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01731 Cma-Chr4:8703199 Cma11g01430 Cma-Chr11:9421355 2.18E-114 dispersed
Cma04g01731 Cma-Chr4:8703199 Cma14g00650 Cma-Chr14:3241654 4.34E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g705 . . Bda01g02222 Bda11g01265 Bpe13g00496 . . . . Cmo18g00804 . Cma18g00800 . Car18g00731 Sed08g1391 Cpe09g00503 Cpe01g01530 Bhi07g01727 Tan04g1231 Cmetu04g2853 Lac13g0202 Hepe10g1642 . . Cla05g02540 Cam05g2730 Cec05g2761 Cco05g2801 Clacu05g2731 Cmu05g2584 Cre05g2698 Cone13ag1039 Cone19ag1029 Cone8ag0661 Cone12ag0642 Lsi04g00548 Csa05g02338 Chy10g00905 Cme10g00521 . . . Bda11g01265 . . Bma01g00049 Bma06g00622 . . . Cma04g01731 . Car04g01764 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003345 2 3 1 2 2 1 2 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 1 1 6 1 4 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01731 Cma_Chr04 FPKM 216.748596 242.512741 42.960121 41.400124 36.81065 40.07394 35.405418 80.173134 80.38591 84.470673