Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01733 ATGCCGCCTTCTTCAAACAATACTTCAAACGATACTTCAAACGATACTTCTCCTCCTACATCGGATTTTGTTTCAAATTCAAGTTTGCCGCCCGAAGCTCCGGATTCTTCTTCTTATTCTCCGCCGCCGCAATCAAATGACTTTACAACGTTCCCACTTAATGAAGCCGATGCTCCTGACTCGTCGTTTGTGTCATCGTCAATTGAAGCTCCACCTGCCGACCACGAAGGTTCACCATCTTCCTCACCGTCAGCTTCTCCGGAACCTGAAAGGACATCGCTGGCCCCTACTATCGCCTCCAATTTAATTGCATTCGACGAGAGTCCGCCACCGCCTAAAGTTTCTGCTTCACCACCGCCGTCTCCCCAGCCTCCTCCACCGCCGCCTCATCCACCACCACCACCTTCACCAACGCCTTCACCTCCGCCTCCACAACTGCCTCCAGAACAGTCGGATGACGTTATCGTCGTCGATCCTCCACCTGCCCCTGTTCCGACCAAGAAAAAATCTTCGGAATATCGAGGAAGTCCACCTTCTCCAATATCTGAGAATGATTCCCCTGATGTGGCCAATGAAAGCGCCAATCGGGGTTCTAAAAAAGCCAAGGAGCCTCCGCCATCTGAATCAACGGATCCTCTTCCTTCACCAGAAAGTCCGGACGTGATTCCTTCACCAGAAAGTCCGGACGTGATTCCTTCACCAGATGCAAACTCGGCGAAGAGGAAACGAGCTCCGAGTCCACCTCCAGAAACAATTTCTCCCGCACCAGAGGATAACATTCCTTCACCTCCCATAGTCACATCCGCTCGCGCTCCAAACAACTCACCTCCTTCCATCGACTCAACGCCCGTGAAATCAACATTGGGGCAGTCCAATGCACCATCGTCTGGTTCAAGTAGTCACACTGATATTGCAGTAGGCGCTGCAGTCATTGGAGTTTTCGTAATCGCTTTGGTTGCTGTGATTTTTGGGTTACTAAGGAAGAAGAAAAGACAGGGAAACATGTATGGGGGCCCCTACACGCCTCCTAATAACTACGGTGCTAAATCGGATGGAAATTACTATCCACATCAACATATGGGCAACTCTGGCTCTGCTGAAGGCTTCTACACTCAGGTCCCACATACTCCGGTTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGATCCAGTGGCAGTGGAGCAGACTCAGGTGTGATAAACAGTGCTAAGTTCGTCTTTAGCTATGAGGAATTGATGGAGATTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTGGCTTCCGGCAGGGAGGTCAGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAATTCAAGGCGGAAGTTGAGATTATCAGTCGTGTTCATCATCGGCATTTGGTGTCTTTAGTGGGCTACTGCGTCTCTGAGAATCATAGATTGCTCATCTATGATTTTGTTCCCAATAAGACTCTTGAGCATCATCTCCATGGCGGTAATGGAGTACCCGTGTTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGAGCTGCAAAGGGTTTGGCATATCTTCATGAAGATTGCCATCCCAGAATTATTCACAGAGACATCAAGTCAGCAAACATTTTGCTGGATGATGCTTTTGACGCACAGGTTGCAGATTTTGGACTTGCAAAACTGACAAACGATACAAACACCCACGTTTCGACTCGTGTCATGGGGACATTTGGGTACATGGCCCCTGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTGTTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCCACTCAGCCTTTGGGGGATGAGAGTTTGGTTGAATGGGCTCGTCCACTCCTCCTTCACACCCTTGAAACTGGGGTTTTTGACGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGCGTTCGTCATTCGGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTGAGATCACTAGATATTGAAACAGACATGTCTGACCTCTCCAATGGTGTCAAATATGGCCAGAGCACCATCTATGATTCTGGACAATACAGTCAAGACATCTCTAAATTCAGGAGAATGGCGCTTGGTGGAGACAGTTCCGAATTCGACATTTACAGTAGCGAATACAGTTCCAGAGAAATGAATGCAAGTGGGGAATCATGGAGATTCGAAAACAACTCAAGCGGTGAATCAGAAACTCGAGCTTTTCACGGACGAACTGGCGCACCACAAAGTCACCCTAGCGGTCGACAATTCTAA 2367 48.67 MPPSSNNTSNDTSNDTSPPTSDFVSNSSLPPEAPDSSSYSPPPQSNDFTTFPLNEADAPDSSFVSSSIEAPPADHEGSPSSSPSASPEPERTSLAPTIASNLIAFDESPPPPKVSASPPPSPQPPPPPPHPPPPPSPTPSPPPPQLPPEQSDDVIVVDPPPAPVPTKKKSSEYRGSPPSPISENDSPDVANESANRGSKKAKEPPPSESTDPLPSPESPDVIPSPESPDVIPSPDANSAKRKRAPSPPPETISPAPEDNIPSPPIVTSARAPNNSPPSIDSTPVKSTLGQSNAPSSGSSSHTDIAVGAAVIGVFVIALVAVIFGLLRKKKRQGNMYGGPYTPPNNYGAKSDGNYYPHQHMGNSGSAEGFYTQVPHTPVGNSFGSQKGTGSSGSGADSGVINSAKFVFSYEELMEITSGFSRQNILGEGGFGCVYQGWLPAGRSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSENHRLLIYDFVPNKTLEHHLHGGNGVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFDAQVADFGLAKLTNDTNTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLLHTLETGVFDGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRSLDIETDMSDLSNGVKYGQSTIYDSGQYSQDISKFRRMALGGDSSEFDIYSSEYSSREMNASGESWRFENNSSGESETRAFHGRTGAPQSHPSGRQF 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8715449 8718864 + CmaCh04G017330.1 Cma04g01733 292814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01733 788 MobiDBLite consensus disorder prediction 247 261 - -
Cma04g01733 788 CDD STKc_IRAK 425 694 - -
Cma04g01733 788 Pfam Protein tyrosine and serine/threonine kinase 422 622 IPR001245 GO:0004672|GO:0006468
Cma04g01733 788 MobiDBLite consensus disorder prediction 749 788 - -
Cma04g01733 788 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 111 755 - -
Cma04g01733 788 SUPERFAMILY Protein kinase-like (PK-like) 400 693 IPR011009 -
Cma04g01733 788 MobiDBLite consensus disorder prediction 111 149 - -
Cma04g01733 788 MobiDBLite consensus disorder prediction 77 99 - -
Cma04g01733 788 MobiDBLite consensus disorder prediction 1 301 - -
Cma04g01733 788 MobiDBLite consensus disorder prediction 1 68 - -
Cma04g01733 788 MobiDBLite consensus disorder prediction 207 230 - -
Cma04g01733 788 Gene3D Phosphorylase Kinase; domain 1 386 494 - -
Cma04g01733 788 ProSitePatterns Protein kinases ATP-binding region signature. 425 447 IPR017441 GO:0005524
Cma04g01733 788 MobiDBLite consensus disorder prediction 172 193 - -
Cma04g01733 788 ProSiteProfiles Protein kinase domain profile. 419 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01733 788 MobiDBLite consensus disorder prediction 266 301 - -
Cma04g01733 788 MobiDBLite consensus disorder prediction 749 770 - -
Cma04g01733 788 Gene3D Transferase(Phosphotransferase) domain 1 495 709 - -
Cma04g01733 788 SMART serkin_6 419 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01733 788 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 111 755 - -
Cma04g01733 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01733 Cma18g00798 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01733 Cma-Chr4:8715449 Cma15g00198 Cma-Chr15:963133 1.34E-173 dispersed
Cma12g01250 Cma-Chr12:9778780 Cma04g01733 Cma-Chr4:8715449 1.46E-171 dispersed
Cma18g00798 Cma-Chr18:7019254 Cma04g01733 Cma-Chr4:8715449 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68514 PF07714 PK_Tyr_Ser-Thr 7.50E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01733 - - cpep:111803284 1328.15