Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g01733 | ATGCCGCCTTCTTCAAACAATACTTCAAACGATACTTCAAACGATACTTCTCCTCCTACATCGGATTTTGTTTCAAATTCAAGTTTGCCGCCCGAAGCTCCGGATTCTTCTTCTTATTCTCCGCCGCCGCAATCAAATGACTTTACAACGTTCCCACTTAATGAAGCCGATGCTCCTGACTCGTCGTTTGTGTCATCGTCAATTGAAGCTCCACCTGCCGACCACGAAGGTTCACCATCTTCCTCACCGTCAGCTTCTCCGGAACCTGAAAGGACATCGCTGGCCCCTACTATCGCCTCCAATTTAATTGCATTCGACGAGAGTCCGCCACCGCCTAAAGTTTCTGCTTCACCACCGCCGTCTCCCCAGCCTCCTCCACCGCCGCCTCATCCACCACCACCACCTTCACCAACGCCTTCACCTCCGCCTCCACAACTGCCTCCAGAACAGTCGGATGACGTTATCGTCGTCGATCCTCCACCTGCCCCTGTTCCGACCAAGAAAAAATCTTCGGAATATCGAGGAAGTCCACCTTCTCCAATATCTGAGAATGATTCCCCTGATGTGGCCAATGAAAGCGCCAATCGGGGTTCTAAAAAAGCCAAGGAGCCTCCGCCATCTGAATCAACGGATCCTCTTCCTTCACCAGAAAGTCCGGACGTGATTCCTTCACCAGAAAGTCCGGACGTGATTCCTTCACCAGATGCAAACTCGGCGAAGAGGAAACGAGCTCCGAGTCCACCTCCAGAAACAATTTCTCCCGCACCAGAGGATAACATTCCTTCACCTCCCATAGTCACATCCGCTCGCGCTCCAAACAACTCACCTCCTTCCATCGACTCAACGCCCGTGAAATCAACATTGGGGCAGTCCAATGCACCATCGTCTGGTTCAAGTAGTCACACTGATATTGCAGTAGGCGCTGCAGTCATTGGAGTTTTCGTAATCGCTTTGGTTGCTGTGATTTTTGGGTTACTAAGGAAGAAGAAAAGACAGGGAAACATGTATGGGGGCCCCTACACGCCTCCTAATAACTACGGTGCTAAATCGGATGGAAATTACTATCCACATCAACATATGGGCAACTCTGGCTCTGCTGAAGGCTTCTACACTCAGGTCCCACATACTCCGGTTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGATCCAGTGGCAGTGGAGCAGACTCAGGTGTGATAAACAGTGCTAAGTTCGTCTTTAGCTATGAGGAATTGATGGAGATTACGTCTGGATTTTCGCGTCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTGGCTTCCGGCAGGGAGGTCAGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAATTCAAGGCGGAAGTTGAGATTATCAGTCGTGTTCATCATCGGCATTTGGTGTCTTTAGTGGGCTACTGCGTCTCTGAGAATCATAGATTGCTCATCTATGATTTTGTTCCCAATAAGACTCTTGAGCATCATCTCCATGGCGGTAATGGAGTACCCGTGTTGGATTGGTCCAAAAGACTCAAAATCGCTTTAGGAGCTGCAAAGGGTTTGGCATATCTTCATGAAGATTGCCATCCCAGAATTATTCACAGAGACATCAAGTCAGCAAACATTTTGCTGGATGATGCTTTTGACGCACAGGTTGCAGATTTTGGACTTGCAAAACTGACAAACGATACAAACACCCACGTTTCGACTCGTGTCATGGGGACATTTGGGTACATGGCCCCTGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTGTTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCCACTCAGCCTTTGGGGGATGAGAGTTTGGTTGAATGGGCTCGTCCACTCCTCCTTCACACCCTTGAAACTGGGGTTTTTGACGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGCGTTCGTCATTCGGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTGAGATCACTAGATATTGAAACAGACATGTCTGACCTCTCCAATGGTGTCAAATATGGCCAGAGCACCATCTATGATTCTGGACAATACAGTCAAGACATCTCTAAATTCAGGAGAATGGCGCTTGGTGGAGACAGTTCCGAATTCGACATTTACAGTAGCGAATACAGTTCCAGAGAAATGAATGCAAGTGGGGAATCATGGAGATTCGAAAACAACTCAAGCGGTGAATCAGAAACTCGAGCTTTTCACGGACGAACTGGCGCACCACAAAGTCACCCTAGCGGTCGACAATTCTAA | 2367 | 48.67 | MPPSSNNTSNDTSNDTSPPTSDFVSNSSLPPEAPDSSSYSPPPQSNDFTTFPLNEADAPDSSFVSSSIEAPPADHEGSPSSSPSASPEPERTSLAPTIASNLIAFDESPPPPKVSASPPPSPQPPPPPPHPPPPPSPTPSPPPPQLPPEQSDDVIVVDPPPAPVPTKKKSSEYRGSPPSPISENDSPDVANESANRGSKKAKEPPPSESTDPLPSPESPDVIPSPESPDVIPSPDANSAKRKRAPSPPPETISPAPEDNIPSPPIVTSARAPNNSPPSIDSTPVKSTLGQSNAPSSGSSSHTDIAVGAAVIGVFVIALVAVIFGLLRKKKRQGNMYGGPYTPPNNYGAKSDGNYYPHQHMGNSGSAEGFYTQVPHTPVGNSFGSQKGTGSSGSGADSGVINSAKFVFSYEELMEITSGFSRQNILGEGGFGCVYQGWLPAGRSVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSENHRLLIYDFVPNKTLEHHLHGGNGVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFDAQVADFGLAKLTNDTNTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLLHTLETGVFDGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRSLDIETDMSDLSNGVKYGQSTIYDSGQYSQDISKFRRMALGGDSSEFDIYSSEYSSREMNASGESWRFENNSSGESETRAFHGRTGAPQSHPSGRQF | 788 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 8715449 | 8718864 | + | CmaCh04G017330.1 | Cma04g01733 | 292814 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g01733 | 788 | MobiDBLite | consensus disorder prediction | 247 | 261 | - | - | |
Cma04g01733 | 788 | CDD | STKc_IRAK | 425 | 694 | - | - | |
Cma04g01733 | 788 | Pfam | Protein tyrosine and serine/threonine kinase | 422 | 622 | IPR001245 | GO:0004672|GO:0006468 | |
Cma04g01733 | 788 | MobiDBLite | consensus disorder prediction | 749 | 788 | - | - | |
Cma04g01733 | 788 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 111 | 755 | - | - | |
Cma04g01733 | 788 | SUPERFAMILY | Protein kinase-like (PK-like) | 400 | 693 | IPR011009 | - | |
Cma04g01733 | 788 | MobiDBLite | consensus disorder prediction | 111 | 149 | - | - | |
Cma04g01733 | 788 | MobiDBLite | consensus disorder prediction | 77 | 99 | - | - | |
Cma04g01733 | 788 | MobiDBLite | consensus disorder prediction | 1 | 301 | - | - | |
Cma04g01733 | 788 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
Cma04g01733 | 788 | MobiDBLite | consensus disorder prediction | 207 | 230 | - | - | |
Cma04g01733 | 788 | Gene3D | Phosphorylase Kinase; domain 1 | 386 | 494 | - | - | |
Cma04g01733 | 788 | ProSitePatterns | Protein kinases ATP-binding region signature. | 425 | 447 | IPR017441 | GO:0005524 | |
Cma04g01733 | 788 | MobiDBLite | consensus disorder prediction | 172 | 193 | - | - | |
Cma04g01733 | 788 | ProSiteProfiles | Protein kinase domain profile. | 419 | 695 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g01733 | 788 | MobiDBLite | consensus disorder prediction | 266 | 301 | - | - | |
Cma04g01733 | 788 | MobiDBLite | consensus disorder prediction | 749 | 770 | - | - | |
Cma04g01733 | 788 | Gene3D | Transferase(Phosphotransferase) domain 1 | 495 | 709 | - | - | |
Cma04g01733 | 788 | SMART | serkin_6 | 419 | 695 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g01733 | 788 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED | 111 | 755 | - | - | |
Cma04g01733 | 788 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 540 | 552 | IPR008271 | GO:0004672|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g01733 | Cma18g00798 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01733 | Cma-Chr4:8715449 | Cma15g00198 | Cma-Chr15:963133 | 1.34E-173 | dispersed | |
Cma12g01250 | Cma-Chr12:9778780 | Cma04g01733 | Cma-Chr4:8715449 | 1.46E-171 | dispersed | |
Cma18g00798 | Cma-Chr18:7019254 | Cma04g01733 | Cma-Chr4:8715449 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68514 | PF07714 | PK_Tyr_Ser-Thr | 7.50E-43 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g01733 | - | - | cpep:111803284 | 1328.15 |