Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01734 ATGAGAGGCTTTGAGGGAGCTCTGGAGTGTCTTAGGGCTCTCGTGGAAACCAAAGTCTGGGATTATTGCATTGTTTGGAGATCGAGGGATGATTCTTCCAGGTTCATTGATTGGGTAGGTTGCTGCTGTAGCGGTGGAAGTTTCGACGCCGGTGGGAAAAGGGAAGCCGGTGAGACAATCCCAGCTACCCTTTGTAAGGACACTCGATTTCAACATTTTAGGAGAACAAATGCTTGCCAAGCACTTGCTCAGTTCCCTTCTACTATATCATTGAACTCTGGGGTTCATGGAGATGTTTTGGTTTCGAACCAACCCATGTGGCTTACTAGTGCTGAAGTTTCTTCTACTTCAAGCTTTTCACATGAGTTGACTGGAACTCGTGTTCTAATACCAATTTCTGCTGGCATTGTGGAGCTTTTTGCGACAAAACATATGCCGAGAGACAGAGAGGTTATAGACTTTGTAATGGCTCACTGTAATATCTCTCTGGAGCAAGAATTTGATACAGAGAGTGAATTGGACGCTGACCTAAATGAGAAAAGACTTGATTCATGTACCAAGTACTATTCAGTAGACTGGCCTGATCCCCAGCCCTTGCTTGATTTCAAATCCAAGTTAGAAATTCTTCCTTCAGTATCCCAGTCCAACTCCTTTCCTAGCTGTGAAGGATCATCCAGTGGCTCAAAGCCTTCCAATGAGCATCACTACTTTGATTCCTATTCAAGTTTGGTTTCACGTGGATTCTTCAACCAACCAATTTACAGGTCCTCTGAATCCAAGAGGCCAACGCCCCAGGAAGATTTGCTTGAACAACAAAGAGATGTGGTTTCGGATTATTCAAAGTTCTTGCAGAAAGATGAAGCCAAAACTGGAGGAGGGAGACAAGGAAAGGAAATTTACAAATCCAAAAATCTTATCACAGAGAGGAGGAGAAGAAACAAGATTAGGGATCGTCTCTACGCGCTACGCGCCTTAGTCCCTAATATATCCAAGATGGATAGAGCATCGATCATTGTGGATGCTATCAACTACATAAGAGAGTTGGAAGAGAATGTGAAAAACCTCCAGAATGAACTTGTTCAATTGGAGCACAAAGACTGTCAAAAGAACAGACACTTGAAGATTTCTCCATCAGAGAAGAACAAAGATGACACAATATATTGGCCTCTTGTTCAGAACGATCAACCAATGTTTATCCTTGGTGAGGAGAAGCCTATGGAGGTGGAAGTGGAAGTGATGCAAATTAATGAAAGAGATTTCTTAATCAAGCTATTCTGCAAGCAGACACAAGGTGGTGTGGTGAGCTCGATAGAGGCTATGGATTCATTGGGCTTGCAGGTTGTTGATGTCAATATTACCACCTTTGGGGGTATGGTCCTGAACATTTTCCATGTTGAGGCGAATGAAAATGACATTCAGCCTAAGAGACTGAGGGACTCACTAATCAAGCTAACAAGCAGAGAAATGAGACAATTAAAATAG 1482 42.85 MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPATLCKDTRFQHFRRTNACQALAQFPSTISLNSGVHGDVLVSNQPMWLTSAEVSSTSSFSHELTGTRVLIPISAGIVELFATKHMPRDREVIDFVMAHCNISLEQEFDTESELDADLNEKRLDSCTKYYSVDWPDPQPLLDFKSKLEILPSVSQSNSFPSCEGSSSGSKPSNEHHYFDSYSSLVSRGFFNQPIYRSSESKRPTPQEDLLEQQRDVVSDYSKFLQKDEAKTGGGRQGKEIYKSKNLITERRRRNKIRDRLYALRALVPNISKMDRASIIVDAINYIRELEENVKNLQNELVQLEHKDCQKNRHLKISPSEKNKDDTIYWPLVQNDQPMFILGEEKPMEVEVEVMQINERDFLIKLFCKQTQGGVVSSIEAMDSLGLQVVDVNITTFGGMVLNIFHVEANENDIQPKRLRDSLIKLTSREMRQLK 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8718800 8721463 - CmaCh04G017340.1 Cma04g01734 292815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01734 493 Coils Coil 338 365 - -
Cma04g01734 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 364 IPR036638 GO:0046983
Cma04g01734 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Cma04g01734 493 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 60 486 - -
Cma04g01734 493 SMART finulus 305 354 IPR011598 GO:0046983
Cma04g01734 493 CDD ACT_UUR-ACR-like 439 483 - -
Cma04g01734 493 Gene3D - 294 366 IPR036638 GO:0046983
Cma04g01734 493 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 156 IPR025610 -
Cma04g01734 493 PANTHER TRANSCRIPTION FACTOR BHLH90 60 486 - -
Cma04g01734 493 MobiDBLite consensus disorder prediction 213 233 - -
Cma04g01734 493 Pfam Helix-loop-helix DNA-binding domain 303 349 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01734 - - - mcha:111019167 748.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01734 Cma-Chr4:8718800 Cma11g01372 Cma-Chr11:9069112 7.48E-35 dispersed
Cma04g01734 Cma-Chr4:8718800 Cma19g00746 Cma-Chr19:7435816 3.78E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g697 Blo01g00396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02335 . Cme10g00524 . . . . . . . . . . . Cma04g01734 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007013 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34901 PF14215 bHLH-MYC_N 2.60E-18 CL0161 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01734 Cma_Chr04 FPKM 0.540031 0.339928 0.208298 0.0 0.489622 0.648659 0.399952 0.586438 0.742793 0.551756