Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01743 ATGGCAAGAATGCCGTCACTGCCAGGCCTCCACCTATTTTCATCTCTCCCTTCAGCTCCGCCGCCGCATGATCCATCCTCCACTTCTACTCCTTCAACACCCATTCCAATTCCCAGATACCCTCCACCCAAATCCCGCATTCTTCGAACCAACCCTCCAAAACCACCTAATCCTGCTCTCAAAACCTTCCACCGCCGTTCCAAATACTACAAGCCTGTGAAGGACGGAGTAATTTCATCCCACGGCGATCGCGCCGTCGTCATCGGCGATTCGGGTGTCTCGTATCTACTTCCCGACGCTCCATTTGAGTTTCAATATAGCTACTCTGAGATTCCTAAGGTCAAGCCCATTGCAATTCGTGAACCGGCGTTTCTTCCCTTTGCACCTCCGACGATGCCGAGGCCCTGGACAGGCAAAGCTCCGTTGAAGAGCTCGAAGAAGAAAATCCCTCTCTTTGATTCCTTCAATCCACCCCCTCCTGGTACGAAGGGAGTTAAGCAAGTCGAAATGCCTGGCCCGTTCCCGCTTGGCAAGTATCCGAAAGAGGGGAAAAGCAGAGAGGAGATACTTGGGGAGCCCCTCAAGAATTGGGAGATACGCATGCTGGTGAAACCCCATTTGTCACATAATCGCCAGGTTAATCTTGGAAGGGATGGACTTACCCACAACATGTTGGAATTGATACATTCTCATTGGAAGCGGCAGCGTGTCTGTAAAGTTCGCTGCAAAGGTGTTCCCACAGTTGATATGGACAATATCTGCCATCATATCGAGGAAAAAACAGGTGGAAAAATAATTCACCGAGTCGGTGGCGTATTATATCTTTTCCGAGGTAGAAACTACAATTATCGTAGTCGCCCTCAATACCCTGTAATGCTGTGGAAACCTGCGGCCCCTGTGTATCCAAAACTTATTCAAGAAGCTCCAGAAGGTTTAACGATAGAGGAAGCTAATGAGCTAAGGATGAAAGGGAAAAATCTTTTGCCAATATGTAAATTAGCAAAAAATGGTGTGTACATTTCCTTGGTAAATGACGTAAGGCACGCTTTTGAAGGAAGCATTTTGGTGAAGGTTGATTGCACTGGGATGCATGAAAGTGATTATAAAAAGTTGGGTGCTAAACTCAAGGAATTGGTTCCTTGTGTGTTATTATCATTTGACAACGAACAGATATTGATGTGGAGGGGAAAGGATTGGAAGTCAGATATTTCAGAAGATGTTTCTGCTACACTTCCTTGTCAAGTTCGCACAAATGATGGTTTGTGTTCATCTGGTGAGTCTATTGAGAATGGTGACCTCTTACATGGCAATTATCATACGATCAAAACTAGCCCAAAAATGAAGCTGCTATGGGAGAAGGCTATTGATTCGAACAAGGCCTTGCTGCTAAATGAGATGGGTCTTGCTCCGGATGACCTTTTAGAGAAAGTTGAGGAGTTTGAGAGAATTTCACAAGCAACCGAGCATTCATATCCAGCATTAATCATGTCAAGTGAAGATGACAGCAGCCCAGATGACACCCTTGAAAGTCAGGATCACGACAAATCTAACTACAGCTCCGACGATGACGAAGATGGGGAAGGAGACCTTTTTGATAATGTTAACCCGTCTGTACCTATGGGATCATTACCTGTTGATATCATAGCAAAGAAGCTCAGGCCTGAATAG 1668 45.74 MARMPSLPGLHLFSSLPSAPPPHDPSSTSTPSTPIPIPRYPPPKSRILRTNPPKPPNPALKTFHRRSKYYKPVKDGVISSHGDRAVVIGDSGVSYLLPDAPFEFQYSYSEIPKVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTKGVKQVEMPGPFPLGKYPKEGKSREEILGEPLKNWEIRMLVKPHLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLFRGRNYNYRSRPQYPVMLWKPAAPVYPKLIQEAPEGLTIEEANELRMKGKNLLPICKLAKNGVYISLVNDVRHAFEGSILVKVDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRGKDWKSDISEDVSATLPCQVRTNDGLCSSGESIENGDLLHGNYHTIKTSPKMKLLWEKAIDSNKALLLNEMGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDDSSPDDTLESQDHDKSNYSSDDDEDGEGDLFDNVNPSVPMGSLPVDIIAKKLRPE 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8755420 8759991 + CmaCh04G017430.1 Cma04g01743 292824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01743 555 SUPERFAMILY YhbY-like 312 401 IPR035920 -
Cma04g01743 555 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 3 553 - -
Cma04g01743 555 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 3 553 IPR044599 GO:0000373
Cma04g01743 555 Pfam CRS1 / YhbY (CRM) domain 312 395 IPR001890 GO:0003723
Cma04g01743 555 Pfam CRS1 / YhbY (CRM) domain 195 277 IPR001890 GO:0003723
Cma04g01743 555 MobiDBLite consensus disorder prediction 491 543 - -
Cma04g01743 555 ProSiteProfiles CRM domain profile. 192 288 IPR001890 GO:0003723
Cma04g01743 555 MobiDBLite consensus disorder prediction 163 182 - -
Cma04g01743 555 SUPERFAMILY YhbY-like 193 285 IPR035920 -
Cma04g01743 555 SMART CRS1_YhbY_2 194 277 IPR001890 GO:0003723
Cma04g01743 555 SMART CRS1_YhbY_2 312 395 IPR001890 GO:0003723
Cma04g01743 555 MobiDBLite consensus disorder prediction 1 64 - -
Cma04g01743 555 ProSiteProfiles CRM domain profile. 310 406 IPR001890 GO:0003723
Cma04g01743 555 Gene3D - 312 409 IPR035920 -
Cma04g01743 555 Gene3D - 193 289 IPR035920 -
Cma04g01743 555 MobiDBLite consensus disorder prediction 18 59 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01743 - - - cmo:103488994 960.674
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01743 Cma-Chr4:8755420 Cma05g01356 Cma-Chr5:10210472 3.41E-151 dispersed
Cma04g01743 Cma-Chr4:8755420 Cma11g00271 Cma-Chr11:1371544 6.12E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g667 . . . . . Bpe10g00846 . Bma15g00177 . . . . . . Sed06g1652 . Cpe01g01543 Bhi07g01749 Tan04g1255 Cmetu10g0674 Lac13g0187 Hepe10g1626 . . Cla05g02555 Cam05g2743 Cec05g2775 Cco05g2815 Clacu05g2744 Cmu05g2596 Cre05g2711 . . . . Lsi04g00562 Csa05g02323 Chy10g00891 Cme10g00538 Blo06g00885 . . . . . . . . . . Cma04g01743 . Car04g01776 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01743 Cma_Chr04 FPKM 7.524522 7.455739 10.783151 11.354501 39.438248 35.807228 41.004074 18.392818 18.775213 19.108318