Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01746 ATGGAAGAAATGTACGGCTTGCAGTCCACGGCGGAGTATTCGGATAAGGCGTTGATGTCGCCGGAGAATCTGATTTTTCCGCCGGATTATCAGAGCCTTTTAGTGAGCTCCGGAACGTTTCGTGATCGGATTCCGGTGTTTGGATCTAACGATTTGCTTTCGGCGGCGGCGTCCGCGATTTCGGAAGCTGAAGCAGCATCTATCACGCCAGAAATTCAAGGTGAAGAAGATATGGTGAACGTGATCAAAGCGAAAATTTCTTCTCATCCTACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCCCCAGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAACCGACCTTTGTAACCGTCACACTGTCACCACGTGCTTGGGCGCTGATCCTGAGCTCGATGAATTCATGGAAACGTACTGCGATATGTTGGTGAAGTATAAATCCGATCTCAAAAGGCCTTTCGACGAAGCAACTACATTCTTGAACAAGATCGAATTGCAACTTAGTAGCCTCTGCACTGGCGCCTTCTCCAGAAGCCATTCCGATGAAGGAGCTGTCTCGTCGGATGAAGAGTTGAGCGGAGGAGAGATGGAAGTTGTGGAGCCGGAAACTCAAACCAAAGGCGAGAACAGGGATCTCAAGGACAAGCTTTTACGTCGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAGACACTCCTTGAATGGTGGAACGTTCACTATAGATGGCCATATCCTACGGAAGCCGATAAGGTTGCACTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAACCATCAGAGAATATGCAGTTTGAGGGAATGGATGGGCTTTCTTCTGGTAGATTATTCAGAGAGGACTGA 975 47.08 MEEMYGLQSTAEYSDKALMSPENLIFPPDYQSLLVSSGTFRDRIPVFGSNDLLSAAASAISEAEAASITPEIQGEEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQETDLCNRHTVTTCLGADPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSSLCTGAFSRSHSDEGAVSSDEELSGGEMEVVEPETQTKGENRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYRWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRLFRED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8772054 8779396 + CmaCh04G017460.1 Cma04g01746 292827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01746 324 Pfam ELK domain 220 241 IPR005539 GO:0003677
Cma04g01746 324 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 313 - -
Cma04g01746 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Cma04g01746 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Cma04g01746 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Cma04g01746 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Cma04g01746 324 SMART HOX_1 242 307 IPR001356 GO:0003677
Cma04g01746 324 SMART ELK_2 220 241 IPR005539 GO:0003677
Cma04g01746 324 SUPERFAMILY Homeodomain-like 241 316 IPR009057 -
Cma04g01746 324 CDD homeodomain 252 304 IPR001356 GO:0003677
Cma04g01746 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Cma04g01746 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 313 - -
Cma04g01746 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Cma04g01746 324 Gene3D - 238 313 - -
Cma04g01746 324 MobiDBLite consensus disorder prediction 186 216 - -
Cma04g01746 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Cma04g01746 324 Pfam KNOX1 domain 82 122 IPR005540 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01746 Cma18g00787 CCT
Cma04g01746 Cma18g00787 ECH
Cma04g01746 Cma05g00030 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01746 Cma-Chr4:8772054 Cma09g00322 Cma-Chr9:1326533 1.96E-85 dispersed
Cma06g00913 Cma-Chr6:6003316 Cma04g01746 Cma-Chr4:8772054 2.43E-10 dispersed
Cma11g01805 Cma-Chr11:12078928 Cma04g01746 Cma-Chr4:8772054 5.54E-75 dispersed
Cma12g00621 Cma-Chr12:3272455 Cma04g01746 Cma-Chr4:8772054 1.37E-70 dispersed
Cma11g00090 Cma-Chr11:437936 Cma04g01746 Cma-Chr4:8772054 1.22E-96 wgd
Cma12g00026 Cma-Chr12:100879 Cma04g01746 Cma-Chr4:8772054 5.37E-17 wgd
Cma18g00787 Cma-Chr18:6949757 Cma04g01746 Cma-Chr4:8772054 0 wgd
Cma04g01746 Cma-Chr4:8772054 Cma05g00030 Cma-Chr5:135056 1.80E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34903 PF03791 KNOX2 3.30E-25 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01746 - - csv:101211876 588.956