Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01748 ATGGAGGTTCAAGGCGGAGCACCGGCGGCTCAGCCCAGGAAGTTCTCTCTTCCGGTGGACTCCGAACACAAATCCACCAAATTCAATATATTCTCCGTCGCAGCTCCCCACATGCGAACGTTTCACCTGTCCTGGATTTCGTTCTGCGCTTGTTTCGTTTCCAGTTTTGCGGCAGCTCCTCTGCTTCCGGTGATCCGCGACAATCTCAATTTAACCGACACTGACATTGGGAACGCCGGAATCGCCTCCGTCTCCGGCGCTGTCTTCGCCCGTATCATGATGGGTTCCGCCTGCGATTTAGTCGGACCACGTCTCGCCTCTGCCTCACTCATCCTCATAACCTCGCCGGCAGTTTATTTAACCTCCATAGCTTCATCCCCTGCTTCGTTTTTCCTCGTTCGATTTTTCACTGGATTCTCTCTCGCCACATTCGTCTCGACTCAATTCTGGATGAGCTCAATGTTCTCCTCCACCGTCGTCGGCACCGCCAATGGCGTAGCCGGCGGTTGGGGGAACTTAGGCGGCGGCGCAACACAGCTGATTATGCCGTACGTGTTCGCCATCATCGAGCAAATCGGCGCAACGAAATTCACCGCGTGGAGAATCGCTTTCTTCATCCCAGCGATTTTCCAAACGCTTTCGGCCTTTGCGGTTCTGATGCTCGGCGAGGACACGCCGGACGGGAACTTCGGGGAGCTGCAGAAAACAGGGGAGAAGGCAAAAGACAAATTTTCAACGGTGGTGTACAATGGGGCGAAGAATTACAGGGGATGGATTTTGGCATTGACTTATGGGTACTGTTTTGGGGTGGAATTAACGATTGACAATATTATAGCGAATTATTTCTACGATAGGTTCAATTTGAACCTGCACACGGCAGGGATCATAGCGGCGAGCTTTGGGCTGGCTAACCTTTTTTCGAGGCCGTACGGTGGGATACTGTCGGACGTGGTGGCGAAGAGATACGGGATGAGGGGGAGGCTGTGGGCTTTGTGGTTGGTGCAGACATTGGGCGGAGTTTTCTGTGTGATTCTTGGGTTGGTTCAGTCTTTGAGTGTTTCCATTGCCATTATGATCATTTTCTCTCTCTTTGTTCAAGCTGCGTGTGGACTTACATTTGGTGTCGTTCCTTTCATCTCCAGAAGGTCGTTGGGGGTAATATCGGGGATGACAGGAGCGGGGGGGAACGTGGGCTCGGTACTGACTCAGCTGATATTCTTCAGAGGGTCAAGATACAGCAAAGAGAAGGGGATAAGTCTGATGGGAGTAATGATAATAGGGTGCACTCTTCCAATACTGTTAATATATTTCCCACAATGGGGCGGCATGCTGACCGGACCAGCTTCCTCCAAGATTGCTTCCGAGGAAGAGTATTACTTGTCGGAGTGGACCCCTGAGGAGAGGGTCAAAGGCTACCATTTGGCTGCCCTCAAGTTTGCTCAAAACAGCCGAACTGAAAGAGGCAAAAGCCTTAGTAAGGGCACTGCTGATGCTGCCTCTGCCGCCGCGGCTTCACCTCACGTCTGA 1527 52.19 MEVQGGAPAAQPRKFSLPVDSEHKSTKFNIFSVAAPHMRTFHLSWISFCACFVSSFAAAPLLPVIRDNLNLTDTDIGNAGIASVSGAVFARIMMGSACDLVGPRLASASLILITSPAVYLTSIASSPASFFLVRFFTGFSLATFVSTQFWMSSMFSSTVVGTANGVAGGWGNLGGGATQLIMPYVFAIIEQIGATKFTAWRIAFFIPAIFQTLSAFAVLMLGEDTPDGNFGELQKTGEKAKDKFSTVVYNGAKNYRGWILALTYGYCFGVELTIDNIIANYFYDRFNLNLHTAGIIAASFGLANLFSRPYGGILSDVVAKRYGMRGRLWALWLVQTLGGVFCVILGLVQSLSVSIAIMIIFSLFVQAACGLTFGVVPFISRRSLGVISGMTGAGGNVGSVLTQLIFFRGSRYSKEKGISLMGVMIIGCTLPILLIYFPQWGGMLTGPASSKIASEEEYYLSEWTPEERVKGYHLAALKFAQNSRTERGKSLSKGTADAASAAAASPHV 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8787116 8789921 - CmaCh04G017480.1 Cma04g01748 292829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01748 508 CDD MFS_NRT2_like 41 434 IPR044772 GO:0015112
Cma04g01748 508 SUPERFAMILY MFS general substrate transporter 35 437 IPR036259 -
Cma04g01748 508 PANTHER HIGH AFFINITY NITRATE TRANSPORTER-RELATED 2 491 - -
Cma04g01748 508 Gene3D MFS general substrate transporter like domains 240 441 IPR036259 -
Cma04g01748 508 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 2 491 IPR044772 GO:0015112
Cma04g01748 508 Gene3D MFS general substrate transporter like domains 34 229 IPR036259 -
Cma04g01748 508 ProSiteProfiles Major facilitator superfamily (MFS) profile. 28 439 IPR020846 GO:0022857
Cma04g01748 508 Pfam Major Facilitator Superfamily 45 401 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01748 Cma-Chr4:8787116 Cma13g00229 Cma-Chr13:1810006 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01748 K02575 - csv:101212365 852.818