Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01749 ATGGATTCTTCTAATGCCTTCCACCGTCTTCTTCCTCTTCTTGTTTTTTTCCTACTTGCCCTTTCTTTCTCTTCCCCTGTTTACTCGCTTCACAGAGACGACAAAAGAATCCATCCCAATAATCAAACGACGACGTTCCATCCCCAGGATCAGCTCAAGAAACTCAAGCTGATTCGAGCTCATCTCAAGAAAATCAACAAGCCCGCCGTCAAGACCATTCAGAGTCCAGATGGCGACCTTATTGATTGTGTTATATCTCATCAACAGCCAGCTTTTGATCATCCATTACTCAAAGGACAGAAGCCATTGGATGTCCTGGAGAGACCGTACGACCAGAGTTCTTCCAGCGAGGCAGAGTCTGAATCGTTCCAATTATGGAGCATGTCCGGCGAATCATGCCCGGAGGGAACAGTTCCAATCAGAAGAACGACGGAAAAGGATATGCTGAGAGCCAGCTCCGTTCGAAGATTTGGAAGAAAACCAAGAAGACGCATTAGAAGAGACTCTTCCACCATAGGCCATGAGCATGCAGTGGGATTTGTAAGCGGACAAGAGTACTACGGCGCAAAAGCGAGTATCAACGTATGGGCGCCGCGAGTGACGAACCAGTACGAGTTCAGTTTGTCACAGATGTGGGTGATTTCTGGTTCTTTTGGAGATGATCTGAACACCATTGAAGCTGGGTGGCAGGTTAGCCCAGAGCTGTATGGAGATAATTATCCAAGATTTTTTACTTATTGGACATCGGATGCTTATCAAGCAACTGGATGCTACAATTTACTCTGCTCTGGCTTCGTTCAAACCAACAGCAGAATCGCCATTGGAGCTGCAATTTCTCCAACATCTTCCTACAATGGTGGCCAATTCGATATTAGTTTACTGGTTTGGAAGGATCCGAAGCATGGGAATTGGTGGTTGGAATTCGGGTCAGGTGTGTTAGTCGGGTACTGGCCGGCGTTTTTATTCACTCACCTGCGAAGCCATGCAACGATGATACAATTTGGTGGTGAGGTGGTGAATTCAAAGACTTCGGGGTTTCATACGGCGACGCAAATGGGGAGTGGCCATTTTGCGGGCGAAGGGTTTGGAAAAGCTTCGTATTTTCGTAACCTGCAAGTGGTGGATTGGGACAATAGCTTGATTCCATTGTCGAATTTAAAGGTTTTGGCAGATCATCCAAACTGCTATAATATTCAAGGTGGGATTAATAGAGTTTGGGGAAATTACTTTTACTATGGTGGGCCGGGAAGAAATGTGAGGTGCCCTTGA 1269 46.26 MDSSNAFHRLLPLLVFFLLALSFSSPVYSLHRDDKRIHPNNQTTTFHPQDQLKKLKLIRAHLKKINKPAVKTIQSPDGDLIDCVISHQQPAFDHPLLKGQKPLDVLERPYDQSSSSEAESESFQLWSMSGESCPEGTVPIRRTTEKDMLRASSVRRFGRKPRRRIRRDSSTIGHEHAVGFVSGQEYYGAKASINVWAPRVTNQYEFSLSQMWVISGSFGDDLNTIEAGWQVSPELYGDNYPRFFTYWTSDAYQATGCYNLLCSGFVQTNSRIAIGAAISPTSSYNGGQFDISLLVWKDPKHGNWWLEFGSGVLVGYWPAFLFTHLRSHATMIQFGGEVVNSKTSGFHTATQMGSGHFAGEGFGKASYFRNLQVVDWDNSLIPLSNLKVLADHPNCYNIQGGINRVWGNYFYYGGPGRNVRCP 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8801233 8804291 + CmaCh04G017490.1 Cma04g01749 292830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01749 422 PANTHER - 9 422 - -
Cma04g01749 422 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 9 422 - -
Cma04g01749 422 Pfam Neprosin activation peptide 72 178 IPR025521 -
Cma04g01749 422 Pfam Neprosin 204 415 IPR004314 -
Cma04g01749 422 Gene3D - 194 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01749 - - - csv:101219221 742.651
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01749 Cma18g00779 CCT
Cma04g01749 Cma18g00779 ECH
Cma04g01749 Cma05g00037 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01749 Cma-Chr4:8801233 Cma18g00182 Cma-Chr18:933788 0 dispersed
Cma11g00085 Cma-Chr11:415189 Cma04g01749 Cma-Chr4:8801233 0 wgd
Cma12g00031 Cma-Chr12:114723 Cma04g01749 Cma-Chr4:8801233 0 wgd
Cma18g00779 Cma-Chr18:6894202 Cma04g01749 Cma-Chr4:8801233 1.05E-09 wgd
Cma04g01749 Cma-Chr4:8801233 Cma05g00037 Cma-Chr5:158229 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g642 Blo01g00390 Blo16g01168 Bda01g02212 Bda11g01281 Bpe13g01479 Bpe10g00850 . Bma15g00174 . . . Cma18g00779 . . Sed06g1661 . . Bhi07g01763 Tan04g1276 Cmetu10g1375 . . . . Cla05g02570 Cam05g2755 Cec05g2788 Cco05g2827 Clacu05g2756 Cmu05g2607 Cre05g2722 . . . . Lsi04g00574 Csa05g02311 Chy10g00880 Cme10g00550 Blo06g00890 . . Bda11g01281 . . Bma01g00040 Bma06g00606 . . . Cma04g01749 Cma05g00037 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002792 3 2 3 2 2 2 0 2 2 2 2 2 1 1 2 2 2 2 0 2 2 2 2 2 1 2 2 4 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01749 Cma_Chr04 FPKM 10.151143 10.932397 3.839808 3.690502 9.76195 8.984971 8.470116 0.902571 0.332805 0.548285