Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01778 ATGGACGAAGAAAATAGAACAAGGGGTGGGGCCGCCGGTAGTACTCGGAAGGCGTTTTTTCGGTCGGCGTCTTGGACTGACCGGTCGCCGTCAAAGCCCCATCGTAACCGGAGCTTAGTGCCTAATAGTAATAAAGCTCGATCATGTCTGCCGCCGCTGCAGCCGCTTTCAATCAGCCGTCGGGAAGTTGAGGAATGGCCACGACCGGGTTCTGATGATCTTGGCGTTTGGCCAAACCCAGAAACTCCGAGAGAGCTTGTTAATAATAAGTCGTCTCAGAATTCTGAATGTGAACAGCCTGTGAGGGAATTTCAGTTTAAGAAGGATAAACTTGCGTTCTTCGATAAGGAATGTTCGAAGATTCTGGATCATGTGTATTTGGGTAGTGATTCTGTGGCCAAGAATCGACAAGTTTTGAGGCAGAATAGGATCACACATGTGCTGAATTGTGTTGGGTTTGTCTGTCCTGAGTACTTCAAGGGTGAATTTGTGTACAGAACTCTTTGGTTGCAAGATAATCCCTCTGAGGATATTACAAGTATTCTCTACAATGTGTTTGATTACTTCGAAGATGTTCGAGAACAAGGCGGTCGGGTTTTTGTGCATTGTTGCCAAGGCGTATCTCGGTCTACCTCTCTTGTGATTGCATACCTCATGTGGAAGGAAGGATGGAGTTTCCAAGATGCTTTTCAATATGTAAAGGCTGCTCGAGGGGTGGCTAATCCGAACTTGGGTTTCGCCATTCAATTATTGCAGTGCCAGAAGCGGGTTCATGCAGTGCCTGCTAGCCCGAATTCGATCTTGAGGATGTATAGGATGGCTCCACATTCGTCATATGATCCGCTTCATCTTGTACCCAAGATGTTGAACACTCCACGTGTTCAAGGACTTGATTCTCGTGGGGCATTTGTTGTGCACGTTCCTTCAGCTATCTATGTCTGGAAGGGGGATAAGTGTGACTCTATGATGTTGAATATGGCTAAGGCTGCAGCGTCACAGGTTGTCCGATATGAAAGGGCTAAAGGCCCCATCCTTAGCATCGAAGACGGGGACGAACCATTGGAATTTTGGGATGCTCTTATGACTAGCCAACATTTGGCTGATAGTTCTGAAGAAGGGCAAGGATTTTTGAAGGTGGGTGACTGGAAAGTTGAGGAGTATAATCCAGATTTTGAAATTTTTCACAGGGCGATTTTAGGTGGGGTCGTTCCACCTTTTGATCGATCTCATACCGAATCGGAAACTTATCTTCCTGCTAGAGAAAATGGGTGGGACACAACCAGAATAAGTGAAACTGCAAAAGATGTTGTCACATCTTTATCTGCAAATATTGATGATGCAGAAGAAGCACCTGTTTCTTCAATTGATCTTGCATCACCACCACTTTCACGCACAGCCTATTTGTGTGGCTCACCTGAATCTTTTGACTGTTTTCCAGATAGTAACCTGGATCTGGAAATAGAAAATTCTAACAAGGAGGAAAGCTCGATCCCAGACGATCGTTTGTCGTTACCAATTCATCCTCTGGGGTCACCAGATTCATTTTCCAGTTTTCAAGGAGGTACTACTAGTCCAAAGTTTGGCACCAAATCCCCTTCACTCTCTCCTTCTACATCAGATAATTCAAGTTCCTTTACCCTTTCACCATCATCGTCTAATTGGTCTGACTTATCATATATGTCTTCTCGGCAACCTTCACCATCTGACATGGATCCATTGCATCCGGCTGTTCGAAACTCTTCCATCATAGACAGTTTTTGTTTACACCACAAAGAAACTCATCCTATCTTTGTAGAGTCCTTTTCCTCTTATCATCCAACATTGAGAGGAGCTTCCCCCTCAATTGCAGAGCGTCGAGGGAGTCATCCTCCACCTAGGATGTTGCTTCCCTCCATTGAAGAAACCTGCAAGGTTCAGAGGAAAATAGTTCGATCATTGTCATTTTCTTTGCCTGACTTAGACGATGATCCGTTGGAGATATCTGGGCACAGACAATCCGAAAATAAAAACAGTAGCAAAGATATTAGTTTTGATATTGGTAAATTTGGGGCTAGCACTGAATTAGAATGCAAGTTTGAGGAAGCAAGAGCTACGGTCATTTACCAGTGGCCTTCAATGAGTAAAGCGGAGGTTAATCAACTTGGAAATCGTAATTCTAGATCAGTGTATATGTTGTTTGATGCAGATGCAAATTTGGGTTCAAAAGGCTGTAACAAATTATTTATCTGGCTGGGGCATGAAGTTTTGCATGAAAATGATGACACTCAACTGATGACTGACGACAGTGGTTGTCTTCACTGGGAGATGATTGGACATATATTTATTAACAATAAGGGAATTCCTAGAGATACCCGTATACAGATAATAAGAGAAGGGGAGGAACCAGAGGAGTTCCTTACACTTCTAAGCCGTTCATTACCTCAAAAAGTGGAAGATGTTGATCTGTGGTCTGTGAAGACCTGA 2463 43.89 MDEENRTRGGAAGSTRKAFFRSASWTDRSPSKPHRNRSLVPNSNKARSCLPPLQPLSISRREVEEWPRPGSDDLGVWPNPETPRELVNNKSSQNSECEQPVREFQFKKDKLAFFDKECSKILDHVYLGSDSVAKNRQVLRQNRITHVLNCVGFVCPEYFKGEFVYRTLWLQDNPSEDITSILYNVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWKEGWSFQDAFQYVKAARGVANPNLGFAIQLLQCQKRVHAVPASPNSILRMYRMAPHSSYDPLHLVPKMLNTPRVQGLDSRGAFVVHVPSAIYVWKGDKCDSMMLNMAKAAASQVVRYERAKGPILSIEDGDEPLEFWDALMTSQHLADSSEEGQGFLKVGDWKVEEYNPDFEIFHRAILGGVVPPFDRSHTESETYLPARENGWDTTRISETAKDVVTSLSANIDDAEEAPVSSIDLASPPLSRTAYLCGSPESFDCFPDSNLDLEIENSNKEESSIPDDRLSLPIHPLGSPDSFSSFQGGTTSPKFGTKSPSLSPSTSDNSSSFTLSPSSSNWSDLSYMSSRQPSPSDMDPLHPAVRNSSIIDSFCLHHKETHPIFVESFSSYHPTLRGASPSIAERRGSHPPPRMLLPSIEETCKVQRKIVRSLSFSLPDLDDDPLEISGHRQSENKNSSKDISFDIGKFGASTELECKFEEARATVIYQWPSMSKAEVNQLGNRNSRSVYMLFDADANLGSKGCNKLFIWLGHEVLHENDDTQLMTDDSGCLHWEMIGHIFINNKGIPRDTRIQIIREGEEPEEFLTLLSRSLPQKVEDVDLWSVKT 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8943123 8946072 - CmaCh04G017780.1 Cma04g01778 292859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01778 820 MobiDBLite consensus disorder prediction 1 94 - -
Cma04g01778 820 SMART dsp_5 117 256 IPR020422 GO:0006470|GO:0008138
Cma04g01778 820 PANTHER MKPA PROTEIN 12 799 - -
Cma04g01778 820 Gene3D Severin 269 368 IPR029006 -
Cma04g01778 820 MobiDBLite consensus disorder prediction 490 575 - -
Cma04g01778 820 MobiDBLite consensus disorder prediction 510 568 - -
Cma04g01778 820 SUPERFAMILY Actin depolymerizing proteins 263 360 - -
Cma04g01778 820 Pfam Dual specificity phosphatase, catalytic domain 125 255 IPR000340 GO:0008138|GO:0016311
Cma04g01778 820 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 111 258 IPR029021 -
Cma04g01778 820 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 176 237 IPR000387 GO:0016311|GO:0016791
Cma04g01778 820 ProSiteProfiles Dual specificity protein phosphatase domain profile. 117 259 IPR020422 GO:0006470|GO:0008138
Cma04g01778 820 ProSitePatterns Tyrosine specific protein phosphatases active site. 201 211 IPR016130 GO:0016311|GO:0016791
Cma04g01778 820 Gene3D Protein tyrosine phosphatase superfamily 84 259 IPR029021 -
Cma04g01778 820 MobiDBLite consensus disorder prediction 35 50 - -
Cma04g01778 820 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 12 799 - -
Cma04g01778 820 CDD DSP 118 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01778 - - - cmos:111458456 1335.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01778 Cma18g00752 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00232 Cma-Chr4:1128648 Cma04g01778 Cma-Chr4:8943123 0 dispersed
Cma04g01207 Cma-Chr4:6155331 Cma04g01778 Cma-Chr4:8943123 0 dispersed
Cma04g01778 Cma-Chr4:8943123 Cma08g01167 Cma-Chr8:7179293 2.92E-22 dispersed
Cma18g00752 Cma-Chr18:6746297 Cma04g01778 Cma-Chr4:8943123 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01778 Cma_Chr04 FPKM 13.081138 16.069044 3.439912 3.424258 2.802748 2.336058 2.433501 12.033566 12.007269 13.518009