Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01787 ATGCTTAGCGTTGATAGAATGATGTCTAATAATCTCTTTATCTGGGTTCCTCTGCTTTTCCTCTGTTCTTCTCTGTTGCTTCTTAAATCCATAAGAAAACAGGCAAAACCCAACAACAAGCTTCTTCCTCCAACCCCTCCCAAGCTTCCTTTGTTGGGCCATTTTCACCTCATTGGCTCCCTCCCCCATCGCTCTCTCTCTCAGCTTTCAAAAAAATATGGCCCCGTCATGCTCCTCCAACTCGGCTCTGTCCCAACCATCGTTATTTCCTCTGCCGCCGCTGCAAGAGAGTTGTTCAAATTTCACGACCTTGCTTCTTGCAGCCGTCCTTGCTCAACAGGTAGTGGAAGACTTTCGTACAGCTATGTTGACATGAGTTTTGCTCCATACGGTGAACACTGGAGGAACGTTCGAAAGATTTGTATGTTTGAGCTCTTCAATGCTTCGAGGGTTCAGTCGTTTCAGTATATTAGAGAAGAAGAGGTGGGTCTGTTATTGAACTCAATCTCTCAACATTCAAATCTTGTTGATCTGAGTGAGAAATCTTACTCTCTCACAGAAAATATAATAACCCGGATGGCTTTTGGGAAGAACTTCAGAGGGGGTGAGCTAGATAATCACAATTTTCACCATGTTGTTCGAAGAGCCATAGTATCACTCGGATATTTCTCCGCGACTGACTACTTTCCCAGAGTGGGTTGGATTGTTGATTGGCTTACTGGCGTTCATGGAAGGTTGGAAAAGAGCTTTTTTGAGTTGGATGCCTTTTTCCAACATGTAATTGATGACCGCATCAACTTCCAGGCAACTTCTCAGAAAAAAGACAATATTATCGACGTTCTGTTGAAATCAGAAAAAGATGGATTGCAACTCAGTGGAGATTGCATCAAGGCACTTACAATGAATATATTTCTAGGTGGAGTTGAAACGGGAGCAGGGGTCATTGTTTGGGCTATGACAGAGCTGGTTAGGAATCCAAGGGTGATGAAAAAGCTACAATATGAAATCAGAAACTGCATCAAAGAGGATGAAGTGAAGGAGAGTCAACTCGAAAAGCTTGAATATCTAAAAATGGTTGTGAAAGAGGTTTTGAGGCTGCATCCTCCCATCCCACTTCTTCCGAGAGAAACCATGTCCCATTTCAAGCTAAACGATTATGATATTGATCCCAAATGTCATCTGTATGTCAATGTTTGGGCGATTGGGAGAGACGTGAATTCCTGGAGTGACGCAGAAAAATTCTTGCCAGAGAGATTCATAGGGAGTGATATCAATTATATAGGACAACATTTTGAGTTATTACCATTTGGAGCTGGTCGGAGAAGATGTCCGGGGATGAATATGGGGATCCTTGCGGTGGAGCTCACACTAGCTAATCTGTTGCTTTGTTTTGATTGGAAATTACCGGATGGAATGAAAGAAGAAGATTTGGACATGGAAGAGAATGGTGGTCTAACCATCCCCAAGAGGTCACCTCTCAAACTTATTCCAATTCGCCACTTAAGAGTGTAG 1512 42.92 MLSVDRMMSNNLFIWVPLLFLCSSLLLLKSIRKQAKPNNKLLPPTPPKLPLLGHFHLIGSLPHRSLSQLSKKYGPVMLLQLGSVPTIVISSAAAARELFKFHDLASCSRPCSTGSGRLSYSYVDMSFAPYGEHWRNVRKICMFELFNASRVQSFQYIREEEVGLLLNSISQHSNLVDLSEKSYSLTENIITRMAFGKNFRGGELDNHNFHHVVRRAIVSLGYFSATDYFPRVGWIVDWLTGVHGRLEKSFFELDAFFQHVIDDRINFQATSQKKDNIIDVLLKSEKDGLQLSGDCIKALTMNIFLGGVETGAGVIVWAMTELVRNPRVMKKLQYEIRNCIKEDEVKESQLEKLEYLKMVVKEVLRLHPPIPLLPRETMSHFKLNDYDIDPKCHLYVNVWAIGRDVNSWSDAEKFLPERFIGSDINYIGQHFELLPFGAGRRRCPGMNMGILAVELTLANLLLCFDWKLPDGMKEEDLDMEENGGLTIPKRSPLKLIPIRHLRV 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9010240 9012644 + CmaCh04G017870.1 Cma04g01787 292868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01787 503 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 SUPERFAMILY Cytochrome P450 43 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 PANTHER CYTOCHROME P450 71B11-RELATED 13 500 - -
Cma04g01787 503 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 Pfam Cytochrome P450 43 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 PANTHER CYTOCHROME P450 71B16-RELATED 13 500 - -
Cma04g01787 503 Gene3D Cytochrome P450 27 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma04g01787 503 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01787 Cma18g00741 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01781 Cma-Chr4:8976316 Cma04g01787 Cma-Chr4:9010240 0 dispersed
Cma04g01782 Cma-Chr4:8991584 Cma04g01787 Cma-Chr4:9010240 0 dispersed
Cma04g01784 Cma-Chr4:9003972 Cma04g01787 Cma-Chr4:9010240 3.43E-53 dispersed
Cma04g01787 Cma-Chr4:9010240 Cma18g00750 Cma-Chr18:6731507 0 dispersed
Cma18g00747 Cma-Chr18:6709254 Cma04g01787 Cma-Chr4:9010240 2.42E-123 dispersed
Cma04g01785 Cma-Chr4:9004468 Cma04g01787 Cma-Chr4:9010240 1.82E-48 proximal
Cma04g01786 Cma-Chr4:9005061 Cma04g01787 Cma-Chr4:9010240 1.53E-80 tandem
Cma18g00737 Cma-Chr18:6654457 Cma04g01787 Cma-Chr4:9010240 1.16E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01787 - K01773 cmos:111458142 703.36