Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01788 ATGGTTAGGGCAAAAACTGGAAGCTATTATCTGGGCATTTGGAGTCCGGTGAAGTTGACCCTTCGTTGCCCTTCTAGGGTAGGACAAGTTACAGCTGATCCACAGCCTGATTTTAGCTTTGATGATTTGCGAGGGGAACTTTATTCTTTGGAGGAGAAGCTAAAGACGTCCACAACTCCTTTCACAAAAACATGTTCACGAGACTTTCCACTCATAAAAACTACGAAGAGAAGCTCCAAGCCTTTTGTAATGGGTGTGTATGAGGATGAGCTACAGAACATATTTAGTGATGGTGAAGTAGTTTGTGACCAAGGTTCAAATGCTAAGCGCTTTAATTGTGATGGATGTTTTCTCAGTGATAGCGAAGATTCTGACAATGAAGCAACTCTTGAAACACGAGCCCATCTAATGGAGGACGTGGATTTAGTGGAAAGTTCTTTAGCTCAGCTAACATATGATCATCTGCTTAACACGAAGGAGGAAATCAGGAACCAACTTGGAAGGTTGGAGACCAACCTCACTACTTTAAATGAAAAGTCCAGTGCTGCAGCCTCTCAAATTGAGAAATACTATGAGGCAAGACGAGAAGCTGACCGGAGACTTGATACTCAATATCAACGCGAGATTGCTGAAGGCCTTGATAAGTACTTGACTACTGTTCAGCGTCACCATGAACAAATATCACAAAGAGAAGAAAGAAAAATAAGAAGTGATGCGGCTTTTGAGGAAGCCAAAAGAAAGGAGAAGGCCATGCTAGAAGAAAAAAAACGTCTAGAAAAGGCTAAAGCAGAAGCTGAGGTTGATGCTGTACAAGCGCAAGAAACTATTGTTGGGGCACCAACCACCAAACCAGTAAACTCAGTCGGACAAGCTAAAGGAACTGCTCTGGATGGAACAAATGTGTCGAGATCACCAGGTAGCATGGTTAGAGCCTCAAGAAATGCTTTGACTTTAGAGCAGGAGAGACTACAAAAACTTAAGGAGTTAGAGGAGGGAAACCAAGCATTGAGATTGAGTTCAAATAAGGATTTTAGCACCCATGAAAGACATATTGCTAGGCTAATTAGACAAATAGTGGGGACAAAAGAGAATGTCAGTACAAAAACCAGTCAACTTCTCAAGATTTTCATGGATCCTCTTTGTCCACAAACTATTAGCATTGCAGCATTTGCAAAGAAGGTCGTTTCTCAATGTGAAAGTTCAGAAAATGCAGTTTTTGCATGCAGTCATGTCATTGTTCTTGTTACCTCACAGGTCCCAAGTGCTATGGTTCTTCTTCTTGCAGAGTTCCATAGAGCTTGCATCTACACAGTTCCGAAGCACATAGGATACTCCGAGGCCGCATTTGAATCCAAAGAGTCATATTACAAAACTCTTGGATTCCGAGAGGATGTAGACGGAAAAATGGAGAGTGTTAAGGATTATTTGAAGCGGCTAGAAGCATACATGAAACTGTATGGGGCATTGGTTCAGACAGAAGTTCCTGGTGCCCGTAACATACATGGTCTTGAGGAAGGTTGGGCATGGCTCGCAAGATTTCTAAATGCAGTTCCCCCCAATATATATACTGCAACCGCGCTCTATGCATTCTTACAAGTAGCAGGCTTTGCACTGTGTAGAAAATATAAATCTCAGTTCAGGAAGCTTCTGAACATCATCTCCGACAACTTCTTGATTGCACTAAGAGGAAAGGAGAACCCAGGGTTGAAACAGATAATCGTGCAGATTGAATCCTATTTGGAAGACAGGAAATTCCTTCAAGAACCAGAAGGAAGGACCTTGCGGGGTTCCTTGTTGTCCAGTGGTATGGTGCCGGAGTCGGAGTACACGAAAGATTCATACAGCCGTTCAGGTAATTCATATTTCTACTGA 1872 42.52 MVRAKTGSYYLGIWSPVKLTLRCPSRVGQVTADPQPDFSFDDLRGELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFSDGEVVCDQGSNAKRFNCDGCFLSDSEDSDNEATLETRAHLMEDVDLVESSLAQLTYDHLLNTKEEIRNQLGRLETNLTTLNEKSSAAASQIEKYYEARREADRRLDTQYQREIAEGLDKYLTTVQRHHEQISQREERKIRSDAAFEEAKRKEKAMLEEKKRLEKAKAEAEVDAVQAQETIVGAPTTKPVNSVGQAKGTALDGTNVSRSPGSMVRASRNALTLEQERLQKLKELEEGNQALRLSSNKDFSTHERHIARLIRQIVGTKENVSTKTSQLLKIFMDPLCPQTISIAAFAKKVVSQCESSENAVFACSHVIVLVTSQVPSAMVLLLAEFHRACIYTVPKHIGYSEAAFESKESYYKTLGFREDVDGKMESVKDYLKRLEAYMKLYGALVQTEVPGARNIHGLEEGWAWLARFLNAVPPNIYTATALYAFLQVAGFALCRKYKSQFRKLLNIISDNFLIALRGKENPGLKQIIVQIESYLEDRKFLQEPEGRTLRGSLLSSGMVPESEYTKDSYSRSGNSYFY 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9016196 9025248 - CmaCh04G017880.1 Cma04g01788 292869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01788 623 MobiDBLite consensus disorder prediction 281 308 - -
Cma04g01788 623 Coils Coil 309 329 - -
Cma04g01788 623 Coils Coil 152 179 - -
Cma04g01788 623 Pfam GLE1-like protein 337 553 IPR012476 GO:0005643|GO:0016973
Cma04g01788 623 PANTHER GLE-1-RELATED 35 594 IPR012476 GO:0005643|GO:0016973
Cma04g01788 623 Coils Coil 241 275 - -
Cma04g01788 623 Gene3D - 313 588 IPR038506 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01788 K18723 GLE1; nucleoporin GLE1 - csv:101216938 860.136
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g609 . . . Bda11g01294 . . . . . . . . . . . . Cpe01g01577 Bhi07g01829 . . . . . . Cla05g02614 Cam05g2802 Cec05g2838 Cco05g2870 Clacu05g2805 Cmu05g2653 Cre05g2770 . . . Cone12ag0684 Lsi04g00628 Csa05g02261 Chy10g00831 Cme10g00601 . . . Bda11g01294 . . . Bma06g00595 . . . Cma04g01788 . Car04g01804 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008883 1 3 1 2 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01788 Cma_Chr04 FPKM 5.108484 6.400826 8.309591 9.165535 10.502647 7.849882 9.678692 10.537507 9.795406 9.890609