Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01790 ATGAGGCTCCGATCATGGCTACTCCCCTGCTCCACCGCCGCCAAACCCAGTTGTAACAAACCGCCTGAACCCTCCTCCTCCTCCTTCTACTTAAGTTCCGACGGAAGCAGTCTTTCAGAAATGTCGGCCAATTGTTCGTCATCGTTGACGTCGACGCCTAGTTCCGACACTAGCTATTCCAGTCTCCAAACGAATCTCTCCCTTCAATCTCTACCGTCCATTCCATCACTTCAAAAACTCCCCACCATCACCGATGCTTTACCCGTCTCTGTTTCTCAACACCACCTCGCCTCTTTCAAGCTCCCAATCTCCCATCTCGCCGTCCATGGCGCCTATCTCTACGTCGCCACCGCTCATGAAATCAACGTCTACGATCGAATCACTTTCTCTCACCTTACCGCATTCAACGATCGAGATTCATCCTCTGGTTCTGTAAAGGGAATATCCTTTCTACGCCGCGAAATCCTCACTTCTCACCAAGACGGCAAAATCCGCGTCTGGAATTTGAGTGAAAACAACAAACAATTCAAATTGGTCAACACTCTCCCTACAGTCAATGACCGTCTCCGCCGATTTATACTCCCGAGTAATTACGTCAACGTCCGTCGTCACAAAAAGGTTCTCTGGATTCAACACGCTGACGCCGTTACTGGACTGGCCGTCAACGGCGACTCTGTTTACTCTGTTTCTTGGGATCGGAGTTTGAAAGTCTGGCAAGGCTCTAACCACCGCTGTGTCGAGTCCGTGAAAGCAGCGCACGAGGACGCCATCAACGCGGTAGCCGTTTCCGCCGGGGGAACTGTGTACACAGGTTCAGCCGATAGAAAAATCCGAGTGTGGGCGAAACCGGAGACGGAGAAGCGTCATGTACTAGTGGCGACATTAGAGAAGCACAAATCGGCAGTAAATGCATTGGCATTAAACGAGGAGGGTTCGTTGCTTTTCTCGGGGGCTTGTGATCGTTCCGTTCTGGTTTGGGAAAGAGAAGACAGTGCAAACCACATGGCGGTGATCGGCGCATTGAGGGGTCACAGAAACGCGATTCTGTGTTTGATCTACGTGTCGGATTTGTTGTTGAGTGGGTCCGCAGATCGGACGGTGAGGGTGTGGCAACGTGGAGCAGATGGGAGTTTCAACTGCTTGTCAGTACTGGAAGGTCATAAAAAAGCGGTGAAATCGCTGGTGGTAGTATCGGAAGGGGAGTCGGACGGCGTCGTATCAGTGTGCAGCGGGAGTCTGGACGGAGAGCTGAAATCCTGGAAACTCTCATTTTCGCCCAATTCGAATATTATGAATTGCAGATAA 1305 51.11 MRLRSWLLPCSTAAKPSCNKPPEPSSSSFYLSSDGSSLSEMSANCSSSLTSTPSSDTSYSSLQTNLSLQSLPSIPSLQKLPTITDALPVSVSQHHLASFKLPISHLAVHGAYLYVATAHEINVYDRITFSHLTAFNDRDSSSGSVKGISFLRREILTSHQDGKIRVWNLSENNKQFKLVNTLPTVNDRLRRFILPSNYVNVRRHKKVLWIQHADAVTGLAVNGDSVYSVSWDRSLKVWQGSNHRCVESVKAAHEDAINAVAVSAGGTVYTGSADRKIRVWAKPETEKRHVLVATLEKHKSAVNALALNEEGSLLFSGACDRSVLVWEREDSANHMAVIGALRGHRNAILCLIYVSDLLLSGSADRTVRVWQRGADGSFNCLSVLEGHKKAVKSLVVVSEGESDGVVSVCSGSLDGELKSWKLSFSPNSNIMNCR 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9033323 9034627 - CmaCh04G017900.1 Cma04g01790 292871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01790 434 Gene3D - 199 286 IPR015943 GO:0005515
Cma04g01790 434 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 19 425 IPR045182 -
Cma04g01790 434 MobiDBLite consensus disorder prediction 18 40 - -
Cma04g01790 434 MobiDBLite consensus disorder prediction 12 40 - -
Cma04g01790 434 PRINTS G protein beta WD-40 repeat signature 155 169 IPR020472 -
Cma04g01790 434 PRINTS G protein beta WD-40 repeat signature 358 372 IPR020472 -
Cma04g01790 434 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Cma04g01790 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 371 IPR001680 GO:0005515
Cma04g01790 434 Gene3D - 287 433 IPR015943 GO:0005515
Cma04g01790 434 Pfam WD domain, G-beta repeat 339 370 IPR001680 GO:0005515
Cma04g01790 434 Pfam WD domain, G-beta repeat 211 238 IPR001680 GO:0005515
Cma04g01790 434 Pfam WD domain, G-beta repeat 245 280 IPR001680 GO:0005515
Cma04g01790 434 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Cma04g01790 434 Pfam WD domain, G-beta repeat 379 421 IPR001680 GO:0005515
Cma04g01790 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Cma04g01790 434 Gene3D - 77 197 IPR015943 GO:0005515
Cma04g01790 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 371 - -
Cma04g01790 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 280 IPR001680 GO:0005515
Cma04g01790 434 SMART WD40_4 242 281 IPR001680 GO:0005515
Cma04g01790 434 SMART WD40_4 203 239 IPR001680 GO:0005515
Cma04g01790 434 SMART WD40_4 334 371 IPR001680 GO:0005515
Cma04g01790 434 SMART WD40_4 128 168 IPR001680 GO:0005515
Cma04g01790 434 SMART WD40_4 288 327 IPR001680 GO:0005515
Cma04g01790 434 SMART WD40_4 377 421 IPR001680 GO:0005515
Cma04g01790 434 PANTHER F21J9.19 19 425 - -
Cma04g01790 434 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 327 - -
Cma04g01790 434 SUPERFAMILY WD40 repeat-like 106 423 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01790 - - - csv:101204588 643.654
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01790 Cma18g00732 CCT
Cma04g01790 Cma18g00732 ECH
Cma04g01790 Cma15g00831 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01790 Cma-Chr4:9033323 Cma10g00081 Cma-Chr10:335128 1.17E-106 dispersed
Cma18g00732 Cma-Chr18:6615935 Cma04g01790 Cma-Chr4:9033323 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01790 Cma_Chr04 FPKM 39.00996 41.808224 27.474337 26.014271 14.443247 13.003086 11.755663 92.661438 96.384201 86.127144