Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01791 ATGGCGGAGACCGGCGTCTACGGCCGTTTTCCAGGGAGTTTGGACCCGACAGCCCAAGAGTTTCGGCCGAGATATTCGACCACTGTGTTTATGCCGCAACCCCACCAGGTTTTCTTTCCGTACTCCTCGCCATATCCACCAATCGGTGATGTCCCTCTTCTGCCGTTCTGCGAGGGTGATGTAGGTTACGCGCCGTTTCCAACTCCGGCGCCGGCGTACATACCAGTGCGGTCGCTAGGACAGGCGGTGTCGTCGGTTGCGACTCGGTCGTTGGTGGTGAGTTTAGTTCCTTGCGATGTAAGCGAGACGATGGTGAGAAGAGAATTGGAGGTGTTTGGGGAGGTTCGAGGAGTGCAAATGGAAAGGGTGAAGGAAGGGATTGTAATCGTCCATTTCTATGACATTCGGCACGCCGAGAGGGCCTTGCGAGAGATTCGGGATCAGCACATGCACCATCAGTGTCGCCTTCGTAACTATTTTAACAACAACAACAACAACAATAACCGTTTCTTCTTTTCAAATTCCGCTCCTCAATTCCCTGATTTCCCTCTCCCTCGTCCTTCTCCGGCGCCTGGCCTCATCGCCGGCCATGCTGTCTGGGCCCAGTTCGTCGTTCCGGCCAGTAATGCTGTTCCGGCTGGGAAGAATCAGGGAACTATCGTCGTCTTCAATTTGGACTCCACTGTTTCCACTTCCTGTCTCAGAGAAATCTTCGAGGCTTTTGGTCCTGTTAAGGAGTTAAGAGAGACGCCATTGAAGATGCAGCAAAGGTTCGTTGAGTTTTTCGACATTAGGGATGCTGGGAAGGCTCTAAAGGAGATGAATGGAAAGGACATCAATGGGAAATCAGTAGTGATTGAGTTCAGTCGGCCGGGCGGCCATGGCAACAAGTTTTTCAATGCTAACTTGACCGCTCCGGCCATCTGCGGCTCGAATAATATATACTCTAGAAGTCTGAAGTCCCCACCCCCTCAGCCTCCGCCGCCACCGCCTCCTCCCACGCCGCCGAGGAATTTCTCAGGTGGGGCAGCTTCAAATGTTCCGCCGCGCTGGTATTACTCAAAACCCCATAGTTTCTCTAGGAAACTGAATCCGCGGAAGGGGAGTCGAAGCCCGAGAAACCCCAGGAAGGGGTTGGAGTCCGTCGATGTGAATGGAAAAATGGCGTCTCTCGATTTGGAAGGCGGCGGTGCGTGCAATAAAATCGACGAGAGAGAATCGTGTGAGACATTGAGAAAGAATTCAAAGATCAGCCACAGTAGTCCCGCTGTTGCTGCCGACCAACAGCCACAGCAGCTGCAGCCCAGTAGGAATAAGCTAAGGAAATGTAGACAATCCAGGAAGTTCGACTCTCGATTCCTTATAAACGACAACAACATGGTGGAATCCGATTGCAGAGATTCAAGAACCACTGTGATGATCAAGAACATCCCCAACAAGTACAGTCAGAAGTTGTTGTTGAACATGTTGGACAACCACTGCATTCACTGCAACGAGCAGATGGGCGACGGGCATAGCCAGCCACTTTCCTCCTACGATTTTGTATATCTACCCATTGATTTCAACAACAAGTGCAACGTTGGATATGGGTTTGTAAACATGACCTCGCCGGAGGCCACATGGAGGCTGTACAAGGCGTTTCATCTTCAACCTTGGGAGGTTTTCAATTCCAGGAAAATCTGTGAAGTCACCTATGCCAGAGTTCAGGGACTGGAAGCACTAAAGGAGCACTTTAAGAACTCAAAGTTTCCATGCGAGATGGACCACTACCTGCCAGTGGTGTTTTCACCGCCTCGGGACGGGAGGGAACTGACGGAGCCACTGCCCATTGGCGGCCAGAAGCAGCAGCCTATCACCATTGGCCTCTCGACTACTCCATCTTCTGGCAGCGAAGATGATGGGGCTGCTGCAACTGCGACAACAGTGGTTGACCAACAGGAGGAAGCCGTGAATGGAAGCAGCAGCAGCAGCAGTGGCAGCAGCATTGGGTGCAGTAGTAGTAGCCAAAGGTGCGGTGGCGTTGATGAAGAATACGACGGTGATCACAGCAAGCACAGCTACCACTTGGGTTGGGTGACTTGCCTGGTTGGCGCCAATGGGTTCTTCCACATAGCAGCAGCAGCAGCAGCAGCCAGGTTGGTGGAAGGAAGGTGA 2154 52.37 MAETGVYGRFPGSLDPTAQEFRPRYSTTVFMPQPHQVFFPYSSPYPPIGDVPLLPFCEGDVGYAPFPTPAPAYIPVRSLGQAVSSVATRSLVVSLVPCDVSETMVRRELEVFGEVRGVQMERVKEGIVIVHFYDIRHAERALREIRDQHMHHQCRLRNYFNNNNNNNNRFFFSNSAPQFPDFPLPRPSPAPGLIAGHAVWAQFVVPASNAVPAGKNQGTIVVFNLDSTVSTSCLREIFEAFGPVKELRETPLKMQQRFVEFFDIRDAGKALKEMNGKDINGKSVVIEFSRPGGHGNKFFNANLTAPAICGSNNIYSRSLKSPPPQPPPPPPPPTPPRNFSGGAASNVPPRWYYSKPHSFSRKLNPRKGSRSPRNPRKGLESVDVNGKMASLDLEGGGACNKIDERESCETLRKNSKISHSSPAVAADQQPQQLQPSRNKLRKCRQSRKFDSRFLINDNNMVESDCRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQMGDGHSQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHLQPWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMDHYLPVVFSPPRDGRELTEPLPIGGQKQQPITIGLSTTPSSGSEDDGAAATATTVVDQQEEAVNGSSSSSSGSSIGCSSSSQRCGGVDEEYDGDHSKHSYHLGWVTCLVGANGFFHIAAAAAAARLVEGR 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9038282 9041402 - CmaCh04G017910.1 Cma04g01791 292872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01791 717 SMART rrm1_1 90 157 IPR000504 GO:0003723
Cma04g01791 717 SMART rrm1_1 219 287 IPR000504 GO:0003723
Cma04g01791 717 CDD RRM1_EAR1_like 88 156 - -
Cma04g01791 717 MobiDBLite consensus disorder prediction 320 338 - -
Cma04g01791 717 MobiDBLite consensus disorder prediction 410 439 - -
Cma04g01791 717 Gene3D - 84 161 IPR012677 -
Cma04g01791 717 PANTHER RNA BINDING PROTEIN 29 658 - -
Cma04g01791 717 Gene3D - 213 297 IPR012677 -
Cma04g01791 717 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 163 IPR000504 GO:0003723
Cma04g01791 717 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 182 - -
Cma04g01791 717 SUPERFAMILY RNA-binding domain, RBD 72 152 IPR035979 GO:0003676
Cma04g01791 717 MobiDBLite consensus disorder prediction 596 666 - -
Cma04g01791 717 CDD RRM3_EAR1_like 469 570 IPR034458 -
Cma04g01791 717 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 284 IPR000504 GO:0003723
Cma04g01791 717 MobiDBLite consensus disorder prediction 616 666 - -
Cma04g01791 717 MobiDBLite consensus disorder prediction 314 386 - -
Cma04g01791 717 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 291 IPR000504 GO:0003723
Cma04g01791 717 SUPERFAMILY RNA-binding domain, RBD 218 548 IPR035979 GO:0003676
Cma04g01791 717 MobiDBLite consensus disorder prediction 414 439 - -
Cma04g01791 717 Pfam RNA recognition motif 2 469 579 IPR007201 -
Cma04g01791 717 PANTHER TERMINAL EAR1-LIKE 1 29 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01791 - - - cpep:111791714 1295.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01791 Cma05g00053 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01405 Cma-Chr1:9943074 Cma04g01791 Cma-Chr4:9038282 6.84E-33 dispersed
Cma04g01791 Cma-Chr4:9038282 Cma17g01399 Cma-Chr17:9279408 1.15E-23 dispersed
Cma12g00043 Cma-Chr12:163908 Cma04g01791 Cma-Chr4:9038282 5.73E-175 wgd
Cma04g01791 Cma-Chr4:9038282 Cma05g00053 Cma-Chr5:213722 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01791 Cma_Chr04 FPKM 1.729518 0.900886 0.615695 0.376284 7.007407 7.791302 6.185916 0.0 0.0 0.0