Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01795 ATGGATGCCACGACGAGCGAAACAGCGGCTATACAATTCCATAGCATTCCTGATCAGTCAGTTTCTACAATTGTCACAAATGCAACATCGACATTGTCGAAACGACGTTGCTTTGGGGAATCCGACCCAGGCGAATTCCCCTTAGCTGCCAATCCCTCCATTGTTCTTCATGTCCTGACAGCATGTAACTTGGATCCTCAAGACCTTGCAAAGTTAGAGGTGACGTGTTCGTTTTTTAGACAGCCTGCGAAATTTGCTCCTGACTATGAATTATCGATTTCGGAACTCGCTGCATTAGATATGTGCCAAAAGAGAGCCATATTCAAACCTATGACAGAAGAACAGCATCAAGCATTGAAGCAAAGATGTGGTGGCTCATGGAAACTGGTATTAAGGTTTTTAGTGGCTGGAGAAGCATGTTGCAGAAGGGAAAAATCCCTGGCAATCGCAGGACCCGGTCACAGCATTGCGGTCACGTCGAAAGGAGCTGTTTACTCCTTTGGATCTAACAGCTCTGGTCAGCTTGGACATGGTACCACCGAAGAGGAATCACGGCCTCGCCTTCTCAGATCCCTGCAAGGAATTCGAATAACTCAGGCAGCAGTAGGGGCTGGAAGGACAATGTTAATCAGCGACGCGGGGCGTGTTTATGCATTTGGCAAGGATTCATTCGGTGAAGCTGAGCATGGAGCTCAAGGAGATCAAATTGTTACAACGCCGAAGTTGGTCGAATCACTGAAGGATATATTTGTGGTGCAAGCTGCAATTGGAAACTTCTTCACTGCAGTATTATCAAGAGAAGGTAGAGTGTATACATTTTCTTGGGGGAGTGACGGTAGGCTCGGTCATCATACTGAACCGAACGACTTGGAACCACGGCCCCTGATGGGAGCGTTAGAAAACACTCCAGTTGTTCAAATTGCTGCTGGATATTGCTACCTTCTTGCTCTAGCTTGTCATCCTAATGGAATGTCGGTATACTCAGTTGGTTGTGGACTGGGCGGGAAGCTCGGTCATGGTTCAAGGACCGATGAGAAACACCCACGTCTCATTGAACAATTCCAGCTTCTGAATTTCCAGCCAGTTGTGGTTGCTGCTGGTGCTTGGCACGCAGCTGTTGTAGGTCGCGACGGTCGAGTTTGTACGTGGGGTTGGGGCCGATATGGATGCCTGGGTCATGGAAATGAGGAGTGTGAATCTTCCCCTAAGGTAGTGGAAGCATTAAGCAATGTTAAAGCAGTTCATGTTGCTACAGGTGATTATACAACGTTCGTCGTATCAGACGATGGCGATGTGTATTCTTTCGGTTGTGGAGAATCTGCTAGTCTCGGACATAACATCGATGTCCCCGGGGGGCAGGGGAATCGGCAACCGCGCATCCTAAGCCCGGAACTAGTAAGGTCTTTGAAGCAAATTAGCGAGCGGGTCGTTCAGATTAGCCTCACTAATTCAATTTACTGGAATGCACACACATTTGCGCTTACCGAATCAGGGAAGTTGTATGCATTTGGTGCTGGAGACAAAGGGCAGCTCGGGGTCGAACTTATGGGGAATCAAACCGAAAGGGGAAATCCAGAGCGGGTTGAGATCGATCTAAATTAA 1602 48.06 MDATTSETAAIQFHSIPDQSVSTIVTNATSTLSKRRCFGESDPGEFPLAANPSIVLHVLTACNLDPQDLAKLEVTCSFFRQPAKFAPDYELSISELAALDMCQKRAIFKPMTEEQHQALKQRCGGSWKLVLRFLVAGEACCRREKSLAIAGPGHSIAVTSKGAVYSFGSNSSGQLGHGTTEEESRPRLLRSLQGIRITQAAVGAGRTMLISDAGRVYAFGKDSFGEAEHGAQGDQIVTTPKLVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGSDGRLGHHTEPNDLEPRPLMGALENTPVVQIAAGYCYLLALACHPNGMSVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNFQPVVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESSPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNIDVPGGQGNRQPRILSPELVRSLKQISERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVELMGNQTERGNPERVEIDLN 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9066519 9069961 - CmaCh04G017950.1 Cma04g01795 292876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01795 533 Gene3D - 146 320 IPR009091 -
Cma04g01795 533 Gene3D - 321 532 IPR009091 -
Cma04g01795 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 497 IPR000408 -
Cma04g01795 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 429 IPR000408 -
Cma04g01795 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 324 377 IPR000408 -
Cma04g01795 533 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 533 - -
Cma04g01795 533 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 364 374 IPR000408 -
Cma04g01795 533 Pfam Regulator of chromosome condensation (RCC1) repeat 326 374 IPR000408 -
Cma04g01795 533 Pfam Regulator of chromosome condensation (RCC1) repeat 214 264 IPR000408 -
Cma04g01795 533 Pfam Regulator of chromosome condensation (RCC1) repeat 161 210 IPR000408 -
Cma04g01795 533 Pfam Regulator of chromosome condensation (RCC1) repeat 429 480 IPR000408 -
Cma04g01795 533 Pfam Regulator of chromosome condensation (RCC1) repeat 377 426 IPR000408 -
Cma04g01795 533 Pfam Regulator of chromosome condensation (RCC1) repeat 267 316 IPR000408 -
Cma04g01795 533 PRINTS Chromosome condensation regulator RCC1 signature 164 180 IPR000408 -
Cma04g01795 533 PRINTS Chromosome condensation regulator RCC1 signature 214 230 IPR000408 -
Cma04g01795 533 PRINTS Chromosome condensation regulator RCC1 signature 254 270 IPR000408 -
Cma04g01795 533 PRINTS Chromosome condensation regulator RCC1 signature 270 284 IPR000408 -
Cma04g01795 533 PRINTS Chromosome condensation regulator RCC1 signature 367 385 IPR000408 -
Cma04g01795 533 PRINTS Chromosome condensation regulator RCC1 signature 425 446 IPR000408 -
Cma04g01795 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 162 213 IPR000408 -
Cma04g01795 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 214 267 IPR000408 -
Cma04g01795 533 SUPERFAMILY RCC1/BLIP-II 149 446 IPR009091 -
Cma04g01795 533 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 533 - -
Cma04g01795 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 498 533 IPR000408 -
Cma04g01795 533 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 320 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01795 - - - csv:101205316 974.541
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01795 Cma18g00729 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01201 Cma-Chr1:8713586 Cma04g01795 Cma-Chr4:9066519 1.56E-12 dispersed
Cma04g01795 Cma-Chr4:9066519 Cma09g00877 Cma-Chr9:4304049 3.39E-65 dispersed
Cma18g00729 Cma-Chr18:6584833 Cma04g01795 Cma-Chr4:9066519 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01795 Cma_Chr04 FPKM 53.381649 55.053928 68.860909 69.255951 25.085926 25.461647 25.031033 70.624268 68.899811 65.728912