Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01805 ATGGGTTTTCCTCGTTTTTTGGCTTTGATTCTTCTCGTCGTTTCGTCTGTTCATTGTCAAGTTAAAGAGTTTATCAGTATAGACTGTGGAGCGACGAAGAACTACATCGACCCAGTTACAGGGCTGGTATGGATTTCCGACGCCGGAATCATGAACGCCGGCAGGTCATCGCCGGTGGAAAACCCAAATGGAAACTCGATGCAGTATCAAACACGGCGGGATTTCCCAATCGACAATAAGAAGTACTGTTACAGTTTGAAAACAGAGGAGAGAAGAAGGTATTTGGTTCGAGCAAGTTTTCAGTATGGGAGTTTGAAGAATGAAGAAACGTACCCTAAATTTCAGCTGTATTTGGATGCAACTAAGTGGTCGACTGTTACCATTTTTGATGCTTCGAGAGTGTATGTGAAGGAGATGATCATTAGGGCACCCTCTGATTCCTTCGATGTGTGCATATGCTGTGCTACTACTGGCTCTCCATTCATATCCACTCTTGAGCTGCGCCCTTTTAACCTCTCAATGTATGCAACGGATTTTGAAGATCATTTCTTCTTGGAAGTTGCTGCTAGAGTGAATTTTGGTGCCCTGACCAAGGACGTGATAAGGTACCCAGATGATCCATATGACAGAATTTGGGATTCAGATCTTGAGAAGAGGCAAAATTATCTTGTGGGGGTGGCTCCGGGGACAGAAAGAATAAGAACTTTGAAGAACATTAATGTAATGACAAGGGAATATCCGCCTGTTAAGGTGATGCAAACTGCAGTTCTTGGCACAAAAGGAGTGCTTAGTTACAGGTTGAATTTGGATGATTTTCCTGCCAATGCCAGGGCTTATGCATATTTTGCTGAGATTGAAGATTTGGGTTGGAACGAGACTCGGAAGTTCAAATTAGAGGAACCTAACGTTCCGGACTCGAGCAATGCAGTGGTGAACATTGAAGAGAATGCCAATGGGACATATACTCTTTACGAACCAAGTTATATGAACGTGACTCTAAGTTTCGTGCTTTCGTTTTCGTTTGTCAAGACTCGAGATTCAACTCGAGGACCAGTTTTGAATGCATTGGAAATTAGTAGATATGTTGAGATTGCTGCCAAGACTGATAGGCGAGATGAGTCTGTCGTGAATGCCTTCCATAACATGTCAGCAGAGAATGTTCGGACAAACGAAGGCGATCCTTGCGTTCCAACAAGCTGGGAATGGGTGACTTGTACTGCCACACAACCGCCGAGAATAACTAAAATTAAGCTCTCCGGGAAGAACGTCGAGGGTGGCATTCCACCAGAAATCAATACTATGGATGGATTAATGGAATTGTGGTTGGATGGAAATTCCCTTGCAGGGCCACTGCCTGACATGAGTAATCTAATAAACTTGAAGATTTTACATCTAGAGAATAACAAATTGACAGGGACGTTACCGTCCTACCTGGGTAGTTTGCCCAACTTACAGGAACTTTATATTCAAAACAATACCTTTTCGGGTGCAATACCTCCAGAATTATTGGTAAAGAAACTCATCTTTAAGTACGATGGTAACTTGGGGCTGCACAAAAATCGACGATTCAATATGCATTCTAAGCTTATTATCGGAGTTTCTCTGGGAGCGTTTGTGCTCCTGATTATTCTACTTATAGGAAGTTTGCTGTTACTCCGCAAGCTTCAAAGAACAGCGCCTTACCAGAAAAAAGGTGGTTCGCTGCAAACCAGCACTAAGCGCTCTTCTGCCTACTCGATCGGCAAGGGCGATGAAGGCATGGCCTACTATTTATCTCTCTCCGTGCTCGAAGAAGCCACGAATAACTTCTCAAAGAAAATTGGTAAAGGCAGCTTTGGATCAGTCTATTATGGGAAGATGAACGATGGCAAGGAAGTGGCAGTTAAAATCATGGCCGAGTCGTCTACACATGGGAATCGACAATTTGCGACCGAGGTTGCCCTCTTATCGAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGCTACTGCGAAGAAGAACATCAACGGATTCTGGTTTATGAATATATGCATAATGGAACGTTACGAGATCACTTATACGGTTCTACGACTCAAAAGCACTTGAACTGGTTGGCTCGCCTGCACATTGCAGAAGATGCAGCTAAAGGGCTCGAGTATTTGCACACGGGATGCAGCCCAAGTATCATTCATCGAGATGTAAAAACTAGCAATATACTCCTCGACATCAATTTGAGGGCAAAAGTTTCCGACTTTGGATTCTCGAGGCAAGCCGAGGAAGATTTGACCCATGTATCAAGCGTTGCTCGAGGAACCGTAGGCTACTTGGATCCTGAGTACTATGCTTCTCAACAACTTACCGAAAAGAGCGATGTCTATAGCTTCGGGGTGGTGCTGCTAGAACTGATCTCTGGAAAGAAACCTGTCTCACCAGAAGACTATGGCAGTGAATTGAACATTGTTCACTGGGCGAGGTCCCTGGTCCATAAGGGGGACGTGACGAGCGTTGTGGATCCATTTCTAGAAGGAAATGTGAAAATAGAATCAGTGTGGAGAATTGCTGAAGTAGCCATACAGTGTGTGCAGCAGCATGGAGCTTCCAGGCCAAGGATGCAGGAAGTCATCTTGGCCATACAAGATGCAATCAAGATTGAACATGGTAATGAAGGAAACCAGAAGCAATCTTCAGGCTGTTCAAGAGCACAATCATCTCGAAAAACATTGCTGACGAGCTTTCTTGAGATCGAGAGCCCCGATGGTTCCATCCTTCCCTCTGCAAGGAACAACACTGACGACACCAAGTTGAAACCTGCACAGGACAAACCGCCTAAAAGATTGAGAAAATTAGGGTTCTTGTTCTTTTTGGGTTTCGAAAGTGGGTTTGGGGCTAACCCTTCTCGATCTTCGGTGTTTTTTGAAGGTGGTTTCTTGTGGAAGAGGGAAGGGATCTTTCAGATTATGTATTATCAGCTGGAGAAATTCTCTCATCAGGATTCTTTGGAGGTTTTGGAGGCGGATATTCAGTATGCAAATTCTCTGGCGGCTGCAATCCCCATGGAAAAAGGGGGTGGCTATCTTCAAATGAAGTTGGTTTACAATCATTTGGCTCCTATTGCTCTGTTTTTGCTTCAATGGATGGACTGTTCTTGCACATGCTTGCTCCCAAGATATTTAAGCCTCTTCCACATACTTGTGTACAAGGTACATCCAGAGGGAAAACAAAAACGAAATATATCAAGGCATGGAAGGAAGGCAACTATTAGGGACTTCTACGCTATAATATTGCCTTCGCTTCAGCAAATCCACGGTAGTTTGGATAAGTTGGACGATTTCGAGGAAGAGCATCGTTGGATTGAGATGCCTAGCAAGAAAAGAGGTGATAAAGATGGTAGACTCATGAACATCGATATGAAACGAGAAGACGAGTGTGGTATTTGTTTGGAGCAGTGCACGAAGATGGTTTTGCCTAATTGCTGTCATGCAATGTGCATCAAATGCTATCGAAATTGGAACACGAGGTCGGAGTCGTGTCCATTTTGTCGTGGCAGCTTAAAGAGAGTCAACTCAGAGGACTTATGGGTGCTCACCTGTAGCGATGATGTGGTCGATGCCGAAACCGTTTCCAAGGAGGATATGTTGTGCTTTCGTCGATATATAAACAGCCTGCCTAAAGACTATCCAGATGCACTCTTCGCAAGGGAAAATCCCGTCGCGAAACGTGAAGGTCAGAACATATCCTCCCTGCTTAATATAGAATAG 3738 44.22 MGFPRFLALILLVVSSVHCQVKEFISIDCGATKNYIDPVTGLVWISDAGIMNAGRSSPVENPNGNSMQYQTRRDFPIDNKKYCYSLKTEERRRYLVRASFQYGSLKNEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIIRAPSDSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDHFFLEVAARVNFGALTKDVIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERIRTLKNINVMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAYAYFAEIEDLGWNETRKFKLEEPNVPDSSNAVVNIEENANGTYTLYEPSYMNVTLSFVLSFSFVKTRDSTRGPVLNALEISRYVEIAAKTDRRDESVVNAFHNMSAENVRTNEGDPCVPTSWEWVTCTATQPPRITKIKLSGKNVEGGIPPEINTMDGLMELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSYLGSLPNLQELYIQNNTFSGAIPPELLVKKLIFKYDGNLGLHKNRRFNMHSKLIIGVSLGAFVLLIILLIGSLLLLRKLQRTAPYQKKGGSLQTSTKRSSAYSIGKGDEGMAYYLSLSVLEEATNNFSKKIGKGSFGSVYYGKMNDGKEVAVKIMAESSTHGNRQFATEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGSTTQKHLNWLARLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINLRAKVSDFGFSRQAEEDLTHVSSVARGTVGYLDPEYYASQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGSELNIVHWARSLVHKGDVTSVVDPFLEGNVKIESVWRIAEVAIQCVQQHGASRPRMQEVILAIQDAIKIEHGNEGNQKQSSGCSRAQSSRKTLLTSFLEIESPDGSILPSARNNTDDTKLKPAQDKPPKRLRKLGFLFFLGFESGFGANPSRSSVFFEGGFLWKREGIFQIMYYQLEKFSHQDSLEVLEADIQYANSLAAAIPMEKGGGYLQMKLVYNHLAPIALFLLQWMDCSCTCLLPRYLSLFHILVYKVHPEGKQKRNISRHGRKATIRDFYAIILPSLQQIHGSLDKLDDFEEEHRWIEMPSKKRGDKDGRLMNIDMKREDECGICLEQCTKMVLPNCCHAMCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDMLCFRRYINSLPKDYPDALFARENPVAKREGQNISSLLNIE 1245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9099762 9111196 - CmaCh04G018050.1 Cma04g01805 292886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01805 1245 Gene3D Ribonuclease Inhibitor 371 521 IPR032675 -
Cma04g01805 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1112 1184 IPR013083 -
Cma04g01805 1245 Pfam Ring finger domain 1134 1174 IPR001841 -
Cma04g01805 1245 PANTHER - 14 899 - -
Cma04g01805 1245 SUPERFAMILY L domain-like 395 502 - -
Cma04g01805 1245 Pfam Malectin-like domain 27 359 IPR024788 -
Cma04g01805 1245 SUPERFAMILY Protein kinase-like (PK-like) 587 868 IPR011009 -
Cma04g01805 1245 Gene3D Phosphorylase Kinase; domain 1 574 676 - -
Cma04g01805 1245 PANTHER OS07G0107800 PROTEIN-RELATED 14 899 - -
Cma04g01805 1245 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672|GO:0006468
Cma04g01805 1245 Pfam Protein tyrosine and serine/threonine kinase 603 868 IPR001245 GO:0004672|GO:0006468
Cma04g01805 1245 ProSitePatterns Protein kinases ATP-binding region signature. 607 629 IPR017441 GO:0005524
Cma04g01805 1245 ProSiteProfiles Protein kinase domain profile. 601 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01805 1245 SMART ring_2 1136 1173 IPR001841 -
Cma04g01805 1245 CDD STKc_IRAK 607 868 - -
Cma04g01805 1245 ProSiteProfiles Zinc finger RING-type profile. 1136 1174 IPR001841 -
Cma04g01805 1245 Pfam Leucine Rich repeats (2 copies) 459 495 IPR025875 -
Cma04g01805 1245 SUPERFAMILY RING/U-box 1127 1178 - -
Cma04g01805 1245 ProSitePatterns Zinc finger RING-type signature. 1151 1160 IPR017907 -
Cma04g01805 1245 Gene3D Transferase(Phosphotransferase) domain 1 677 897 - -
Cma04g01805 1245 SMART serkin_6 601 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01805 1245 MobiDBLite consensus disorder prediction 912 935 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01805 Cma18g00724 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01805 Cma-Chr4:9099762 Cma06g00349 Cma-Chr6:1616971 0 dispersed
Cma08g00038 Cma-Chr8:189992 Cma04g01805 Cma-Chr4:9099762 1.72E-85 dispersed
Cma14g00068 Cma-Chr14:301227 Cma04g01805 Cma-Chr4:9099762 2.78E-60 dispersed
Cma04g01805 Cma-Chr4:9099762 Cma04g01807 Cma-Chr4:9113831 2.73E-36 proximal
Cma12g00051 Cma-Chr12:193081 Cma04g01805 Cma-Chr4:9099762 1.37E-108 wgd
Cma18g00724 Cma-Chr18:6549239 Cma04g01805 Cma-Chr4:9099762 0 wgd
Cma04g01805 Cma-Chr4:9099762 Cma05g00062 Cma-Chr5:249279 4.88E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68516 PF12819 Malectin_like 5.40E-86 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01805 - - csv:101207149 1677.92