Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01807 ATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACGTACTCTTGTACAAGTATGCAGGTGTACATCGATGGACACCAACCGTTGGCGTCGCCACGAGAAAGAAAAGCCACCCTCAAGGAGTTCTATGGTCTGCACTTCCCTCCTAACTTTTACTTTTTCCAGAGACAAACAGATCAAATTCATTAACAATGAAACCATGGCAGCTGTAATATACCCTTCACTTAGGCAACTTCGAAGTGGGCACCTCAAGTCAAAAGAAGAGACTTCTTCTAGGAAGAGAATAGAAGATCAAAAGGGGATATCTAATGAGGATCTTCAGAGGGATGAAGAGTGTGGGATATGCATGGAAAACTGCAGAGATGTTGTGTTGCCAAACTGTGGCCATTCGATGTGCCTCAGCTGCTTTCAGGACTGGAGTCCGAGGTCGCGTTCCTGTCCCTTCTGCCGTAACTGTCTAAATAGGTTGAGCGCCAGGGACCTGTGGGTTCTTACAAGCGACACTGACATTGTCGACTCGGAAACTCTTACCAAGGAAAATCTAATACATTTCTACCTTTATATCGAAAGCCTGCCACTGTTTCAACCAGATGTGAGTGTCGCAGTGGAACAGTTGATATCAGTGATGGCTGGTCTTGCGCTCGGACAATCTCAGGACACTGAGACATCCTTAGGAGTGCTTGTTCTACAGAATCCTGATGCATTCTGA 726 46.01 MDGFQLHRSSSKFLGPFPRTLVQVCRCTSMDTNRWRRHEKEKPPSRSSMVCTSLLTFTFSRDKQIKFINNETMAAVIYPSLRQLRSGHLKSKEETSSRKRIEDQKGISNEDLQRDEECGICMENCRDVVLPNCGHSMCLSCFQDWSPRSRSCPFCRNCLNRLSARDLWVLTSDTDIVDSETLTKENLIHFYLYIESLPLFQPDVSVAVEQLISVMAGLALGQSQDTETSLGVLVLQNPDAF 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9113831 9115039 + CmaCh04G018070.1 Cma04g01807 292888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01807 241 PANTHER RING FINGER PROTEIN 41, 151 71 209 - -
Cma04g01807 241 ProSiteProfiles Zinc finger RING-type profile. 118 156 IPR001841 -
Cma04g01807 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 179 IPR013083 -
Cma04g01807 241 Pfam Zinc finger, C3HC4 type (RING finger) 115 157 - -
Cma04g01807 241 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 71 209 - -
Cma04g01807 241 SMART ring_2 118 155 IPR001841 -
Cma04g01807 241 ProSiteProfiles DHHC domain profile. 136 169 - -
Cma04g01807 241 SUPERFAMILY RING/U-box 108 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01807 - - - cmax:111492969 279.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01807 Cma-Chr4:9113831 Cma12g00051 Cma-Chr12:193081 1.37E-39 dispersed
Cma04g01805 Cma-Chr4:9099762 Cma04g01807 Cma-Chr4:9113831 2.73E-36 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1118 . . . . . . Bma14g01877 . . . . . . . . . Cpe01g01591 Bhi07g01857 . . . . . . Cla05g02628 Cam05g2819 Cec05g2854 Cco05g2887 Clacu05g2822 Cmu05g2670 Cre05g2787 Cone13ag1107 Cone19ag1095 Cone8ag0715 . Lsi04g00643 . . Cme10g00620 . . . . . . . . . . . Cma04g01807 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008688 0 4 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01807 Cma_Chr04 FPKM 4.125344 4.963448 0.847608 1.029792 1.982323 0.0 2.122888 0.624462 0.382856 0.0