Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01810 ATGGCTCCGAAATCCAAAGACAGGCCGAAGCCATCTCCGTCCTCTCAGCCGCCTCCACCGATTGAAGATCAATTCACTTCTCTAAACAGACATATCCAGCGATCTGAATTCTCACAAGCCGTCAAAGTCGCAGATCAAATTCTGTCAATTGCTCCTGGCGACGAAGACGCCCTTCGATGCAAAATCGTAGCCTTGATCAAGGATGATAGAATTGATGATACTCTTTCAGCGATTCAATCGTCTCGGACAATTGACTTTAGCTTCTTCAAGGCATACTGCCTATACAGGCAAAATAAGTTAGATGAAGCTTTGGGTTCCTTGAGAGACCAAGAGAGAAACTCAGCCACGATGCTGTTGGAATCCCAGATCTTGTATCGTTTAGGAAAAATGGATGCTTGTGTGGACACTTATCAGAAGCTCGCAAAATCAAAGATTGATTCTTTAGAAATAAATTATGTTGCAGCTTTAACTGCAGCTGGGCGGGCCTCTGAAGTACAAGGAGCCATGGAGGCTCTTAGGGTGAAAGCTACCAGCAGCTTTGAGTTGGCATACAATACTGCATGTTCCTTAGTTGACGTGAACAAGTATACGGATGCAGAACAACTGTTACTGTCAGCTCGAAGAATTGGCCAGGAAACGCTCATGGAAGAGAATTTGCCTGATGAAGATATTGAGATTGAGCTAGCCCCAATAGCTGTCCAACTTGCATACTTGCAGCAGCTTCTTGGTCACACATCAGAAGCCTCTGAAGCTTACAGAGACATCATGAATCGAGATTTGGCAGATGAATCTTCGCTTGCAGTGGCAGTGAACAATCTTATAGCATTGAAAGGTCCAAAAGATATTTCCGATGGCCTTAGAAAACTTGATAAGCTAAAAGATAAAGATGCACCAAACTTCCGGCTTGCTCGTGGACTTGAACCAAAGATTTCTCAAAAGCAAAGGGAAACAATATATGCAAATCGTCTCCTCCTCCTTCTCCATGCTAATAAAATGGATCAGGCTCGAGAAATGGTTGCAACGCTGGCTGATATGTTTCCAAACAGTGTGACCCCTCTACTTCTTCAAGCGGCTGTATTAGTCAGAGAGAATAAAGCTGGGAAAGCTGAAGAAATTTTGGGTCAGTTTGCTGAAAATTTCCCAGACAAGTCCAAGTTGGTTCTACTAGCGAGGGCGCAGATTGCTGCTGCTGCGGGCCATCCTCATGTTGCATTTGAGTCCCTCTCTAAGATACAGGATATTCAGCACATGCCTGCCACCGTTGCTACACTTGTGTCTCTCAAAGAACGTGCTGGAGATGTTGATGGAGCCATTGCCGTGCTGGACTCTGCAGTCAAATGGTGGTCAAATGCCATGACTGAAGACAACAAGCTTGATGTTGTACTGCAGGAAGCAGCTTCATTCAAGTTGAGGCATGGCCGCGAAGAAGATGCGGCCAAGTTATACGAAGAGCTAGTTAAGACCCATGGAAGTATAGAAGCATTGGCTGGATTGGTCAAGACGGTTGCTCGTGTGGATATTAAGAAGGCAGAAACTTATGAGAAGCAGTTGAAGCCATTGCCAGGCTTGAAGACGGTTGACGTGGAGAATCTGGAGAAGACTTCCGGAGCAAAACATGTTGAAAGTGCTGCTGATCTTGGAGCGTCTGATGCATACATGGTGGATAAAAGCAAGGCCAAATCAAAGAAAAAGAGAAAGAGAAAGCCAAGATATCCCAAAGGATTCGATCCAGCAAATCCAGGTCCTCCCCCTGATCCAGAAAGGTGGCTTCCCAGGAGAGAGAGATCAAGCTATAGACCCAAGCGAAAAGACAAGAGAGCTGCCCAGGTGAGAGGTTCCCAAGGTGCAGTGGCCAGAGAAAAACACGACTCTGGTGTCTCTGGAGGCAGTTCCAACAATGCAGACTCAAAATCCAACCAAGCAACGAGTTCGAAAGCGACCAACCAAAACACAGGCTCCAATCAATCCAGGCCTTCATCGAAGTCCTCGAAAAAGAAGTCTAGGAATTAA 2010 45.77 MAPKSKDRPKPSPSSQPPPPIEDQFTSLNRHIQRSEFSQAVKVADQILSIAPGDEDALRCKIVALIKDDRIDDTLSAIQSSRTIDFSFFKAYCLYRQNKLDEALGSLRDQERNSATMLLESQILYRLGKMDACVDTYQKLAKSKIDSLEINYVAALTAAGRASEVQGAMEALRVKATSSFELAYNTACSLVDVNKYTDAEQLLLSARRIGQETLMEENLPDEDIEIELAPIAVQLAYLQQLLGHTSEASEAYRDIMNRDLADESSLAVAVNNLIALKGPKDISDGLRKLDKLKDKDAPNFRLARGLEPKISQKQRETIYANRLLLLLHANKMDQAREMVATLADMFPNSVTPLLLQAAVLVRENKAGKAEEILGQFAENFPDKSKLVLLARAQIAAAAGHPHVAFESLSKIQDIQHMPATVATLVSLKERAGDVDGAIAVLDSAVKWWSNAMTEDNKLDVVLQEAASFKLRHGREEDAAKLYEELVKTHGSIEALAGLVKTVARVDIKKAETYEKQLKPLPGLKTVDVENLEKTSGAKHVESAADLGASDAYMVDKSKAKSKKKRKRKPRYPKGFDPANPGPPPDPERWLPRRERSSYRPKRKDKRAAQVRGSQGAVAREKHDSGVSGGSSNNADSKSNQATSSKATNQNTGSNQSRPSSKSSKKKSRN 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9123219 9127406 + CmaCh04G018100.1 Cma04g01810 292891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01810 669 MobiDBLite consensus disorder prediction 1 24 - -
Cma04g01810 669 SUPERFAMILY TPR-like 233 488 IPR011990 GO:0005515
Cma04g01810 669 MobiDBLite consensus disorder prediction 554 669 - -
Cma04g01810 669 Pfam Putative TPR-like repeat 58 154 IPR031545 -
Cma04g01810 669 Gene3D Tetratricopeptide repeat domain 20 168 IPR011990 GO:0005515
Cma04g01810 669 PIRSF SRP72 13 668 IPR026270 GO:0006614
Cma04g01810 669 Pfam SRP72 RNA-binding domain 556 600 IPR013699 GO:0006614|GO:0008312|GO:0048500
Cma04g01810 669 SUPERFAMILY TPR-like 29 210 IPR011990 GO:0005515
Cma04g01810 669 Gene3D Tetratricopeptide repeat domain 223 518 IPR011990 GO:0005515
Cma04g01810 669 PANTHER SIGNAL RECOGNITION PARTICLE 72 15 668 IPR026270 GO:0006614
Cma04g01810 669 MobiDBLite consensus disorder prediction 625 660 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01810 K03108 SRP72; signal recognition particle subunit SRP72 - csv:101207391 1113.6
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1135 . . . . . Bpe10g00775 . Bma15g00247 Cmo04g01908 . . . . . Sed01g2093 . Cpe01g01594 Bhi07g01862 Tan04g0103 Cmetu10g0385 Lac13g0093 Hepe10g1549 . . Cla05g02631 Cam05g2824 Cec05g2859 Cco05g2892 Clacu05g2827 Cmu05g2675 Cre05g2792 Cone13ag1119 Cone19ag1104 . . Lsi04g00648 . . Cme10g00628 . . . . . . . . . . . Cma04g01810 . Car04g01823 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007046 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01810 Cma_Chr04 FPKM 42.098118 44.58083 32.730259 35.1544 32.272705 30.362755 32.312721 50.972305 47.307838 49.785568