Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01812 ATGGCCTTGAATTTTTCACATCGACCGATCTTTCCCGCACATCTTTCGGAGGACAATTTGGTTTCTTCGATGAGCATTTCAAGTGGTTTTGTCGTCGATGGTGTTCCCGAGAGGAATTCTGACGTTTATGGGACGTCCTGGTTGATTACCCGGGAGCTCGTGGATTGCCTTGATTTTTTAGAGGACACCTGCAAAGGGGGTGGGCGAGATTGTGTCCCGGGGGATATTCTGGATCTCTTGCCTTCAGATCCATTTGGTATGGATATAAGTACCACTTTTACAGCAATCACAGGCTGGCTTGACGATCTGAACGTAGACTATGGTGGTGGATATGGAGGAGATGAGAGAGTCCCAGTTGATGGGAGTAGTCGGCTTTTTGCTGAATTGAACTACCTTTGGAACAATGCTTTTAGGTTCCAGGCGTCTCCCTTTGGAAACGAAGGAATTCCTCATAGTTCGAGTGAGCTGAGGGCATTCGGTGTGTGGTCAGATGAGAGAGAAGCAGGTGGTGTATCCTGTCATTCTGAGCCTAAGTCACCATATGGTGAAGATACAATTCAGATTCTTGGTACTGAACCTGAAATTTCTGGGGATGGATTCGGTGCGTGGTCTGATGGGATAAAAGCAGATGGTTTATCCTGCCTTACTGATCCTCAATCCCCTTATGTTGTGGATACAACAATTCGCACTCTTGGTATTGAACCTGAAATTTCTGGAGGCGGATTCAGTGCGTGGTCTGATGGAAGAAAAGGAGGTAGTTTATACTTCCATATTGATCCTCAATCATCATATGTTGTGGATACAATTAAAACTCTTGGCATTGAGCCTGAAATTTCTGGAGGGGGATTCGGTGCATGGTCTGATGGAAGAAAAGCAGGTTGTTTATCCTTCCATACTGATCCTCAATCGTCATATGTTGTGGATACAATTCAGACTTTTGGTACTGAACCTGAAATTTCTGGAGGGGGATTCTGTGTGTGGTCTGATGGGAGAAAAGCAGGTGGTTTATCCTGCCAGACTGATCCTCAGTTATCATACATAGTGGATACAATTCAGACTCTTTGTATTGAACCTGAAATTGCTAAGGGAATATTCGTTGCATGGCCTGATGGGAGAAAAGCCGGTGGTCTATCCTGCCATCCTTATCCTGAATCACCATCATATGTTGTGGATATAAGTCTGCCTCTTGGAATTGAACTTGAAACTTCTGGGGTGCAATCTGTAGTTCGTGATGAGGGAAGTCATGTCTCTATTGATGCAGGTGGGTCTCCTCATGCAGCTTTAAATTTTGTGCTTGGTTATCTGGGCACGCGGGAACTTCTTATTGTTGAATCAGTTTGCAAGTCACTGCAGTCAGCTGCAGAAGGAGACCCTTTCTTTTGGAGAAACATTAACATATGTGGAAAGCTGGATGTGAAGATTACAGACGATGTTCTCTTAAAGCTGACTAGCAAGGCTCAAGGTGGTTTGGAAAGTTTGAGCCTCGTGAACTGCGTAATGATAAGTGATGATGGTCTCAACCAGGTTCTTCTCAATAATGCTAAGGTCACAAAGTTATGTGTTCCAGGATGCACAAGACTCACCATTGGAGGCATTGTTAATAATTTGAAGGCCTTCAAGTCAAAAGGTAGTCCGGGAATGAAACATTTAAGTATAGCTGGAATGTATGGAGTAACAGAAGCTCATTTTAAAGAGCTGGAGAAGCTGTTATTAGGTACTGACAACTTGACCCAACTAAATACTCACGAGCCTCGATTTTATCGAGGTGGAACTCATCTTCCTTCATGCAATGATGGGCGTGCCATTGACATAGAAAGATGCCCAAAATGCACGAACATGAGGATCGTTTATGACTGCCCGGTGGTTGGCTGTAAGGGAATAAAGGAAGGTGACACAAACCCTGATGCCAACACTCAGAAATGCCGGGGATGCACCCTTTGCATAGCTCGGTGCGACTGGTGTGGACGTTGCATTGACGAGACAGTACATGAGGAGACATTTTCTCTGGACTTGCGTTGCATTGATTGTGGGAAGGAGATATTGAAATGTGAATAA 2055 44.53 MALNFSHRPIFPAHLSEDNLVSSMSISSGFVVDGVPERNSDVYGTSWLITRELVDCLDFLEDTCKGGGRDCVPGDILDLLPSDPFGMDISTTFTAITGWLDDLNVDYGGGYGGDERVPVDGSSRLFAELNYLWNNAFRFQASPFGNEGIPHSSSELRAFGVWSDEREAGGVSCHSEPKSPYGEDTIQILGTEPEISGDGFGAWSDGIKADGLSCLTDPQSPYVVDTTIRTLGIEPEISGGGFSAWSDGRKGGSLYFHIDPQSSYVVDTIKTLGIEPEISGGGFGAWSDGRKAGCLSFHTDPQSSYVVDTIQTFGTEPEISGGGFCVWSDGRKAGGLSCQTDPQLSYIVDTIQTLCIEPEIAKGIFVAWPDGRKAGGLSCHPYPESPSYVVDISLPLGIELETSGVQSVVRDEGSHVSIDAGGSPHAALNFVLGYLGTRELLIVESVCKSLQSAAEGDPFFWRNINICGKLDVKITDDVLLKLTSKAQGGLESLSLVNCVMISDDGLNQVLLNNAKVTKLCVPGCTRLTIGGIVNNLKAFKSKGSPGMKHLSIAGMYGVTEAHFKELEKLLLGTDNLTQLNTHEPRFYRGGTHLPSCNDGRAIDIERCPKCTNMRIVYDCPVVGCKGIKEGDTNPDANTQKCRGCTLCIARCDWCGRCIDETVHEETFSLDLRCIDCGKEILKCE 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9128645 9131544 + CmaCh04G018120.1 Cma04g01812 292893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01812 684 PANTHER F-BOX PROTEIN SKIP14 1 684 - -
Cma04g01812 684 SUPERFAMILY F-box domain 424 465 IPR036047 GO:0005515
Cma04g01812 684 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 1 684 - -
Cma04g01812 684 SUPERFAMILY RNI-like 473 608 - -
Cma04g01812 684 Gene3D Ribonuclease Inhibitor 424 632 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01812 - - - cmos:111458458 1365.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01812 Cma18g00723 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01812 Cma-Chr4:9128645 Cma15g00971 Cma-Chr15:5436652 6.49E-40 dispersed
Cma12g00056 Cma-Chr12:201111 Cma04g01812 Cma-Chr4:9128645 5.64E-37 wgd
Cma18g00723 Cma-Chr18:6540510 Cma04g01812 Cma-Chr4:9128645 4.40E-18 wgd
Cma04g01812 Cma-Chr4:9128645 Cma05g00066 Cma-Chr5:284948 3.54E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1136 . . Bda01g02193 . Bpe13g00519 . Bma14g01878 Bma15g00246 . Cmo18g00710 . Cma18g00723 . Car18g00669 Sed06g1724 Cpe09g00566 Cpe01g01595 Bhi07g01864 Tan04g0101 Cmetu10g0075 . Hepe10g0079 . . . . . . . . . Cone13ag1120 Cone19ag1105 Cone8ag0721 . Lsi04g00650 . . Cme10g00629 Blo06g00819 . . . . . Bma01g00025 . . . . Cma04g01812 . Car04g01824 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012567 0 2 0 0 0 1 2 1 1 1 0 1 2 1 1 1 1 0 2 1 1 0 1 1 1 1 1 2 3 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01812 Cma_Chr04 FPKM 8.40114 9.174554 10.880254 9.178579 7.804862 7.063106 7.636622 7.521465 7.290996 8.744202