Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01814 ATGGATATTCCTTCTGTTATCGTAAATGCTGTGTTTATTTTTGCATTATCGATGTGGATTTTGCTTCACTCGTGTAGACGAGAAGCAGAGAGTGGAATCCCTCAATCGAGAAACAGAGCATTTCGAGAGTTTAAATGGCTAACCAGCATTACGATCTTTTCTAATGCTGTTCTTCCGTTTTGGTATTCTGGTTTTGCTGCTTATGAGTACTGGAATCGTAGAATCGTTGATTGGGGATTGATCATCTCCGCTTTAACGTGGATTTTCGCCGCTGCGATTGCTTTCTACTGGAGAAATGGAACTAATCATCAAGCCAAAAGATGGCCGTTGATTCTAATTGTTTGGTGGATTTTCTCTTGTTTGTATGGATTAGGTTCTTCGATTATTTACCTGCTTACATACTTGAAATCCATGGAGTTTCCTCATTTTCTTCCAAAAGCTACTGTTATAGATTTTGCTTCATTCACTCTGTCTTTGATAATCTGCTGTACTGCGCTGATTGTTAACTATCATGATAAACACAATGATCTTGAGAAATCATTGCTCCAAAAAGAGAATGATTCTTGTTCTGAAGATGATGGTGGGTTCATCAGTCCTGGATTTTGGAGTCAAATTACATTCCAATGGCTGAATCCGCTCTTCAAAAGGGGGAGGAATCAAAAACTTGAATTAGTTCATGTTCCTTGTGTTCCTCAATCTGAAACAGCTGAATATGTTTCCTCCTTGCTGGAAGAATCGCTTCAGAGAAAGAAAATTGAATCATCTTCCTTGCCCAAAGCTATAGTTCTAGCTACATGGAAATCTCTGGTTTTAACTGCAATATTTGCGGGAGTCAACACATTAGCATCCTTTATGGGGCCTTTCTTAATCTCCAACTTTGTGAATTATCTGTTGGGAAAAAGCGATGAATCAAGCAACCGTGATGGGTTGATTCTTGCATTCTTCTTCTTCTTTGCTAAGACATTGGAGTCTCTTACTCAAAGACAGTGGTATTTCGGCACTCACCGTGTCGGTATCCAGGTAAGGGCAGCTCTTACAGTGATGATCTACAAGAAATCTTTATCTGTTAATGCTGCTGGTCCAAGTAATGGAAAGATCATTAATCTAATAAATGTTGATGTTGAAAGAATTGGAGACTTCTCTTGGTATATCCATAAGATTTGGTTGCTTCCTGTCCAAATAGCTCTAGCACTTATCGTTCTTTTTAGGAATCTTGGAGCTGCTCCTTCCATTACTGCTCTGTTAGCTACAATATTTATAATGGTAAGCAACACACCTTTAGCTAATGTTCAAGAAAGTCTACACTCGAAAATAATGGATGCAAGAGACTCTAGAATCAAATTGACATCAGAGACTCTAAAGAACATGAGAGTCTTGAAACTCCATTCTTGGGAACAGACATTTATGAAGAAGGTCTTGCAACTTCGAGAAGTCGAAAGGAGCTGGTTAAAGAGATATCTGTATACATGCTCCGTTATAGCATTTCTGTTTTGGGTTTCACCAACTTTAGTTTCAGTACTTACTTTTGGTGCTTGTGTTATGATGAAAATCCCTCTAACAGCAGGCACGGTTTTATCAGCCATTGCTACTTTTAGGATCCTACAAGATCCAATTTATAACCTACCGGAGCTGATTTCCATGATTGCTCAAACAAAAGTCTCCCTTGACCGTATACAAGAGTTCATTCAAGAAGAAGATCAAAGGAAGCAGATTTATCATCCTCCTGCCAGTTCATCAGATATCGTGATCGAAATGGAGGTAGGGGAGTATTTGTGGGAAGCGAGCGATCTAAATTTTAAGAAACCAACCATAAAAGTTGCAGAAAAGATGCAAATACCAAAAGGTTACAAAGTTGCAGTTTGCGGGTCGGTCGGTTCGGGAAAATCGAGCCTACTTTGTAGTATACTCGGTGAGATCCCACAGATTTCAGGAACACAAATGAAGATACATGGAACTAAAGCTTATGTTCCCCAAAGTGCTTGGATCCAATCAGGCACTGTAAGAGAGAATGTGCTGTTTGGGAAGGAGATTGATAAACATTTTTATGAGGATGTGCTAGAAGCCTGCGCTTTGAATCAGGATATCAAGCTGTGGCTGGATGGCGATTGCACCTTGTTGGGAGAGAGGGGTGTGAATCTAAGTGGTGGACAAAAGCAGCGGATTCAATTGGCAAGGGCAGTGTATAGTGATGCAGATGTTTACTTCCTGGATGATCCTTTTAGTGCTGTGGACGCATGTACTGGAACACATTTGTTCAAGAGATGTCTTTTGCAACTTCTGTCTAGTAAAACTGTTGTATATGCTACTCATCACTTGGAATTCATAGAAGCTGCGGACCTTGTTCTGGTAATGAAAAATGGCCATATTGTTCAATCGGGAAAGTATGCAGAATTAATATCAGATTCGAACGGTGAACTTGCTAGACACATTGCAGCACATAGAAGATCACTGAATGGAGTTAAGCCACTGAAAGAAGATGAACATCATAAAAGACCATGTAAGACACATCAAATAGAAGCTCTAGATGAAAGTTCTTCCTTGTCTCTTGGAAATGGTGGCCACTCTGTGAGAGCTCAAGAAGAGGAAGCACAAACCGGTCGTGTAAAGTGGAGTGTCTACTCAACCTTCATCACATCTGCTTATAAAGGAGCTCTTGTTCCTGTAATCCTTCTGTGTCAAGTTTTGTTTCAAATCCTTCAGATGGGCAGTAATTACTGGATTTCTTGGGCAACAGAAGAAGAAGGCAAGGTCAGCAGAAAGCAGTTTTTCGTGACGTTCGTTTTGATGTCCGGTGGGAGCTCCATCTTTATATTAGGCCGCGCTGTTTTTATGGCAACCATTGCTATCGAGACGGCACAACGAATGTTTCTTGGAATGGTGACATCAATATTTGCAGCACCTATTTCATTTTTTGATGCCAAACCTTCAAGCCAAATCCTTAACAGGTCATCTACTGATCAAAGCACCTTGGATACAGATATCCCTTATAGATTAGGAGGATTGGCTTTTGCACTCATTCAGCTGTTGAGTATCATCATTCTGATGTCCAAGGTTGCATGGCAAGTTTTCCCACTCTTCCTTGTCGTCCTTGCTCTCTCTATATGGTACCAGGGATATTACATCAGTACTGCTAGAGAACTAGCTAGAATGGTCGGGATTCGAAAGGCTCCGATTCTTCATCACTTTTCGGAAACAGTCGTTGGTGCAACAATTATCCGTTGTTTTAATCAAGAGGATCGTTTCTTGAGAAAAACACTGAAGCTGGTTGATGATTATTCTCGTGTGGTTTTTCACAACTCGACTTCTATGGAATGGTTGTGCCTACGGATCAATTTTCTTTTCGACGTCGTCTTCTTTCTTGCACTCGTCATCTTAGTGACCCTTCCTAGAACAGCAATTGATCCTAGCTTAGCAGGATTAGCAGCCACATATGGTTTGAACATGAATGTGCTTCAGGCTTGGGTGATATGGAATTTATGCAACGTTGAGAACAAAATGATATCTGTTGAAAGAATTCTTCAGTTTACGAACATCGCTTCGGAAGCACCCCCGGTTATCGAAGATTGTAGGCCGCTGCCGGAATGGCCAACGGAGGGAAAGATAGAACTTGAGAACCTCCATGTCCAATACCGTCCTAATCTTCCATTGGTTCTCAAAGGGATCACTTGTACCTTCCAAAAAAGGAAGAAAGTTGGAGTTGTTGGCAGGACAGGAAGTGGTAAGTCCACCTTAATCCAAGCACTTTTTAGAGTGGTTGAGCCTTCTGCTGGAAGGATTCTCATTGATGGAGTTGATATTTGCAAAATGGGTCTGCATGATCTGAGGTCTAAGTTGGGTATCATTCCACAAGACCCAACATTGTTCCAAGGAACCATGAGAACTAATCTAGACCCTTTGCAACAACATAATGATCAAGAAATATGGGAGGTCCTTCACAAGTGTCGGTTCGCCGAGATCATCCAAACAGACCGAACAGTTCTTGAAGCACCAGTTGCTGAAGATGGAGAGAATTGGAGTGTTGGACAGAGGCAACTTGTTTGCTTGGCTAGGGTGCTTCTCAAGAAGCGTAGGATTCTTGTGTTGGATGAGGCAACAGCCTCCATTGATACTGCAACAGAAAACAGAATTCAGGAAACGATAAGAGAGGAGACGAATGGATGCACCGTCATTACCGTGGCTCATCGAATCCCGACGGTCATCGACAATGATTTGGTTTTGGTTCTTGATGAAGGCAAGGTGATCGAGTACGATTCACCGTCTCGATTACTCGAGAACAGTTCTTCTATGTTTTCGAAGTTGGTGGCAGAATTCTTGAGGAGATCATCCAACAGTCGCTCATAG 4341 41.42 MDIPSVIVNAVFIFALSMWILLHSCRREAESGIPQSRNRAFREFKWLTSITIFSNAVLPFWYSGFAAYEYWNRRIVDWGLIISALTWIFAAAIAFYWRNGTNHQAKRWPLILIVWWIFSCLYGLGSSIIYLLTYLKSMEFPHFLPKATVIDFASFTLSLIICCTALIVNYHDKHNDLEKSLLQKENDSCSEDDGGFISPGFWSQITFQWLNPLFKRGRNQKLELVHVPCVPQSETAEYVSSLLEESLQRKKIESSSLPKAIVLATWKSLVLTAIFAGVNTLASFMGPFLISNFVNYLLGKSDESSNRDGLILAFFFFFAKTLESLTQRQWYFGTHRVGIQVRAALTVMIYKKSLSVNAAGPSNGKIINLINVDVERIGDFSWYIHKIWLLPVQIALALIVLFRNLGAAPSITALLATIFIMVSNTPLANVQESLHSKIMDARDSRIKLTSETLKNMRVLKLHSWEQTFMKKVLQLREVERSWLKRYLYTCSVIAFLFWVSPTLVSVLTFGACVMMKIPLTAGTVLSAIATFRILQDPIYNLPELISMIAQTKVSLDRIQEFIQEEDQRKQIYHPPASSSDIVIEMEVGEYLWEASDLNFKKPTIKVAEKMQIPKGYKVAVCGSVGSGKSSLLCSILGEIPQISGTQMKIHGTKAYVPQSAWIQSGTVRENVLFGKEIDKHFYEDVLEACALNQDIKLWLDGDCTLLGERGVNLSGGQKQRIQLARAVYSDADVYFLDDPFSAVDACTGTHLFKRCLLQLLSSKTVVYATHHLEFIEAADLVLVMKNGHIVQSGKYAELISDSNGELARHIAAHRRSLNGVKPLKEDEHHKRPCKTHQIEALDESSSLSLGNGGHSVRAQEEEAQTGRVKWSVYSTFITSAYKGALVPVILLCQVLFQILQMGSNYWISWATEEEGKVSRKQFFVTFVLMSGGSSIFILGRAVFMATIAIETAQRMFLGMVTSIFAAPISFFDAKPSSQILNRSSTDQSTLDTDIPYRLGGLAFALIQLLSIIILMSKVAWQVFPLFLVVLALSIWYQGYYISTARELARMVGIRKAPILHHFSETVVGATIIRCFNQEDRFLRKTLKLVDDYSRVVFHNSTSMEWLCLRINFLFDVVFFLALVILVTLPRTAIDPSLAGLAATYGLNMNVLQAWVIWNLCNVENKMISVERILQFTNIASEAPPVIEDCRPLPEWPTEGKIELENLHVQYRPNLPLVLKGITCTFQKRKKVGVVGRTGSGKSTLIQALFRVVEPSAGRILIDGVDICKMGLHDLRSKLGIIPQDPTLFQGTMRTNLDPLQQHNDQEIWEVLHKCRFAEIIQTDRTVLEAPVAEDGENWSVGQRQLVCLARVLLKKRRILVLDEATASIDTATENRIQETIREETNGCTVITVAHRIPTVIDNDLVLVLDEGKVIEYDSPSRLLENSSSMFSKLVAEFLRRSSNSRS 1446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9140791 9147219 + CmaCh04G018140.1 Cma04g01814 292895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01814 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 582 811 IPR003439 GO:0005524
Cma04g01814 1446 SUPERFAMILY ABC transporter transmembrane region 888 1183 IPR036640 GO:0005524|GO:0016021
Cma04g01814 1446 CDD ABC_6TM_ABCC_D2 886 1176 IPR044726 GO:0140359
Cma04g01814 1446 Pfam ABC transporter 1218 1366 IPR003439 GO:0005524
Cma04g01814 1446 Pfam ABC transporter 610 740 IPR003439 GO:0005524
Cma04g01814 1446 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 270 550 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma04g01814 1446 Gene3D ABC transporter type 1, transmembrane domain 853 1182 IPR036640 GO:0005524|GO:0016021
Cma04g01814 1446 Gene3D ABC transporter type 1, transmembrane domain 255 568 IPR036640 GO:0005524|GO:0016021
Cma04g01814 1446 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 109 1444 - -
Cma04g01814 1446 Pfam ABC transporter transmembrane region 271 537 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma04g01814 1446 Pfam ABC transporter transmembrane region 891 1128 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma04g01814 1446 SUPERFAMILY ABC transporter transmembrane region 265 566 IPR036640 GO:0005524|GO:0016021
Cma04g01814 1446 SMART AAA_5 1227 1418 IPR003593 -
Cma04g01814 1446 SMART AAA_5 614 788 IPR003593 -
Cma04g01814 1446 Gene3D - 585 831 IPR027417 -
Cma04g01814 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 802 IPR027417 -
Cma04g01814 1446 CDD ABCC_MRP_domain2 1199 1419 - -
Cma04g01814 1446 CDD ABC_6TM_ABCC_D1 271 558 IPR044746 GO:0140359
Cma04g01814 1446 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 888 1164 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma04g01814 1446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1192 1427 IPR027417 -
Cma04g01814 1446 Gene3D - 1185 1437 IPR027417 -
Cma04g01814 1446 ProSitePatterns ABC transporters family signature. 713 727 IPR017871 GO:0005524
Cma04g01814 1446 CDD ABCC_MRP_domain1 583 787 - -
Cma04g01814 1446 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1201 1435 IPR003439 GO:0005524
Cma04g01814 1446 PANTHER OS01G0902100 PROTEIN 109 1444 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01814 - - - csv:101219301 2568.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01814 Cma18g00720 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01814 Cma-Chr4:9140791 Cma09g00988 Cma-Chr9:5043668 0 dispersed
Cma18g00720 Cma-Chr18:6515218 Cma04g01814 Cma-Chr4:9140791 1.56E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1141 . . . . . . . . Cmo04g01910 Cmo18g00707 . Cma18g00720 . Car18g00666 . Cpe09g00569 Cpe01g01598 Bhi07g01868 . . Lac13g0089 Hepe10g1543 . . Cla05g02633 . Cec05g2863 Cco05g2895 Clacu05g2831 Cmu05g2678 . . . . . Lsi04g00654 . . Cme10g00632 Blo06g00821 Blo11g00984 . . . . . . . . . Cma04g01814 . Car04g01826 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006115 0 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 2 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01814 Cma_Chr04 FPKM 4.506975 5.096301 8.111387 8.402028 13.551759 13.794436 13.739505 0.534965 0.574386 0.373647