Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01817 ATGGAGTTTCAAATGCCCGAGAGCCCATCATCATTGGCCTTGTTCTTCTTCTTCTTCTTCATGTTTCTATTTGTATATGTATTCGCTTACTTGGTTGTGCTCCAGAACTGGGGGCCCAAGCACAGGCTAGAGGCCTCAAGCTGCTTCATATCACTCGCCCATGGCAGTCCCGTCGTCATCATGGCCATCATTGCAATTCTCCAAGCTCCAAACATGGCTGATTTCGCCGCTCTCAATACCAAATACCAGGGCCTTGTCCTCCAGTACAGCATGGCTTATTTCTTGATGGATCTTCTTCACTTCATACTGTTTTATCCACGAGATTTCGTCTTTATATGTCATCATCTGGCAGTGCTTTACGTGTTCGCTACATGCAATTACTTGGTTCGTCGTGGTGCTCTGCCCATTCTGGTGCTTTTGGTGCTTGCGGAGTTCAGCAGTGGGTGCCAGAATGTTTGGACCCTAGCGGGTTACAGAAGGGCTGATGTGCCGGCCGCCGCTAAGTTTCAGGACTTCGTGTCTCCATATTTCTTCACCTTTTACAGCATTCTCAGAGGGGGCTTCGCGCCTGTCTTTCTGCATAAGATGGGAGAATTTTATGTCAGCAGAGCAGCAGAAAATTTGATTCCTAAGTGGGCTTGGATTTCATGGATGGGTGTAATTGGAACTGCCATTTTAGTTAGCATATTGTGGGTCGGAAATCATTGGGTTCTCTGGGTCGTGTTGAAACTGAAACTGAACAAGATTTGGCAGGTCCATCGTATGAGTCAAACAGAGAGGGCTAGACAGCAAGTCCACTATTCATATGCTGACAACTGA 819 47.01 MEFQMPESPSSLALFFFFFFMFLFVYVFAYLVVLQNWGPKHRLEASSCFISLAHGSPVVIMAIIAILQAPNMADFAALNTKYQGLVLQYSMAYFLMDLLHFILFYPRDFVFICHHLAVLYVFATCNYLVRRGALPILVLLVLAEFSSGCQNVWTLAGYRRADVPAAAKFQDFVSPYFFTFYSILRGGFAPVFLHKMGEFYVSRAAENLIPKWAWISWMGVIGTAILVSILWVGNHWVLWVVLKLKLNKIWQVHRMSQTERARQQVHYSYADN 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9156514 9157795 - CmaCh04G018170.1 Cma04g01817 292898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01817 272 ProSiteProfiles TLC domain profile. 40 225 IPR006634 GO:0016021
Cma04g01817 272 PANTHER TRAM, LAG1 AND CLN8 (TLC) LIPID-SENSING DOMAIN CONTAINING PROTEIN 10 241 - -
Cma04g01817 272 PANTHER GLABROUS1 ENHANCER-BINDING PROTEIN-LIKE 2 10 241 IPR040327 -
Cma04g01817 272 SMART lag1_27 40 242 IPR006634 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01817 - - - csv:101219781 319.701
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01817 Cma-Chr4:9156514 Cma14g00700 Cma-Chr14:3554188 3.18E-81 transposed
Cma04g01817 Cma-Chr4:9156514 Cma11g01485 Cma-Chr11:9776940 2.66E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1165 . . . . . . Bma14g01881 . Cmo04g01912 . . . . . . . Cpe01g01601 . . . . . . . . . . . . . . . . . . Lsi04g00657 . . Cme10g00636 . Blo11g00981 . . . . . . . . . Cma04g01817 . Car04g01829 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013585 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01817 Cma_Chr04 FPKM 1.147741 1.257095 1.738336 1.601523 0.905666 0.550905 0.426167 0.896227 0.760387 0.856347