Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01823 ATGGATGTTCCGGAGGTTGAAGAAATATTTTTTGCTGCCGGTGATGCCAAGTTGCATGGAGAAATGTACAAGAAGCTCGCTGCAATTTATGGTCAAGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCACGACCTAGAAGCAAAACTGGTATTCAGGCTTTATGTTCGTTACATGTTGCTCTTGAGAAGGCCAAGAATACTCTTCGGCATTGCTCGGAGTCCAGTAAACTCTACTTGGCTATAACTGGAGACGCTGTTCTAGCCAAATTTGAGAAGGCAAGATGTTCTCTTGAAGCTAGTCTTATATGCGTTGAAGATATTGTCTCACAATCAATTGGATTTCAGATTCAGCCAATAGTGAACGAACTCAAGGACACTGTTTTCTTACTCGATCCACTCGAGAAACAGGTTGGTGATGATATCATTGCACTACTCTTGCAAGAAAGAAAATTTGATGATTCCAATGGCCACAATGAGCTAGAGCATTTTCATATGGCTGCCACGAAACTTGGAATTACCTCATCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTTGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTATCTTTTGCATCTCATGAGGAAGTATTCTAAGTTATTTAGAAGTGAGGTATTGGATGACACCGACTCACAGGGTGGATCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGACAATGGACTTACAGCAAACGGTCAAGCTTTTGAACAGCAGCTTTCAAAGCTCAGTTCCTTTAATTTCAAGCCAAATTATAGGACATCAGGGAAAATGCCTCTTCCACCCGAGGAGTTGAGGTGTCCAATATCATTGCAGCTAATGTACGACCCTGTAATAATTGATTCTGGGCAAACATATGAAAGGATTTGCATAGAAAAGTGGTTCAGTGATGGTCATAAAACCTGCCCGAAGACCCAACAGAGGCTCTCCCACCTGTCCATGACGCCTAATTATTCTGTGAAGGGTCTCATTGCTAATTGGTGTGAACATAACGGTGTTCCGATCCCTGATGGTCCACCAACGTCACTTGATCTGAATTATTGGAGGCTTGCATTGTCTGATTCTGAATCTGGAACATCAAGATCTGTGGACAATGTTGTTGGCTCTCACACGTTGAAGGAAGTTAAGGTAGTTCCTTTGGAAGAAAGTGGATCAATTAAAGTTGATGAAGAAAATGAAGCAGATGATAATACACGCACGGAGGAGTCGTCTAATTTCATTACACTGGAGAGTTGTGTAAATTTTATGACAGTATTGACTGAAGAGGGAGACTTGAGAACAAAATGTAGGGTTGTGGAACAGATAAGACTTTCACTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTGCTGAAGCACTTATGGAATTCCTAACTTTAGCTCTTATTGAAGAAAACGCTGATGCTCAGGAAAGTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATTGCAGCGGGTGTAATCTCGTTGTTGGAGAACATGATTTTGAAAGCCAATTTACATGGACCTGCAACAGCTCTGTATTTGAATCTTTCCTGCCTAGAAGATGCCAAACCCATCATTAGTTCGAGTAGAGCCGTTCCTTTCCTGATCCAGCTGCTTACTCATAACGGCGAATCCCAAACCAAGCTCGATGCTCTTCATACCCTCTATAACCTTTCAACCACGCCCTCCATCGTTCCTGTTCTCCTCTCCGCTGGTATTATCGCTGGACTTCAATCCTTCATCGCAGCTCCAAGCGACAGTACATGGACAGAGACTTCCTTAGCTATCTTAATAAACATAGCTTCAAGCCAGTTGGGTATAGAACAAGTAACTTCGGCTCCAGAGCTTATCAGTGGGTTGGCAGCAATCGTGGACGCCGGCGAACGTGCCGAGCAGGAGCAAGCTGTCTCGTGTTTGTTGACTTTGTGTAGAGGGAGTGAAAGATGCAGTCAAATGGTGTTACAAGAAGGAGTGATTCCGGGATTGGTGGCAGTTACAGTAAATGGGAGTTCGAGAGGGAAAATAAAAGCTCAAAAACTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAAGACACAGCCGATACCATTCAGCAGCGAGATGGAAATAGTGACGCTGCAGCCATGGGTGCTCCAGATTATAAGCCATTATGCAAATCAGTGTCCAAGAAAAAGATGGGGAAAGCTTTAAGCTTTTTTGCGAAGAGCAAACGATTTTCACTCTACCAATGTTGA 2313 43.36 MDVPEVEEIFFAAGDAKLHGEMYKKLAAIYGQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVLAKFEKARCSLEASLICVEDIVSQSIGFQIQPIVNELKDTVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHMAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRSEVLDDTDSQGGSTPCSPTVRCSLEDNGLTANGQAFEQQLSKLSSFNFKPNYRTSGKMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKTCPKTQQRLSHLSMTPNYSVKGLIANWCEHNGVPIPDGPPTSLDLNYWRLALSDSESGTSRSVDNVVGSHTLKEVKVVPLEESGSIKVDEENEADDNTRTEESSNFITLESCVNFMTVLTEEGDLRTKCRVVEQIRLSLKDDDEARILMGANGFAEALMEFLTLALIEENADAQESGAMALFNLSVNNNRNREMMIAAGVISLLENMILKANLHGPATALYLNLSCLEDAKPIISSSRAVPFLIQLLTHNGESQTKLDALHTLYNLSTTPSIVPVLLSAGIIAGLQSFIAAPSDSTWTETSLAILINIASSQLGIEQVTSAPELISGLAAIVDAGERAEQEQAVSCLLTLCRGSERCSQMVLQEGVIPGLVAVTVNGSSRGKIKAQKLLMLFREQRQKDTADTIQQRDGNSDAAAMGAPDYKPLCKSVSKKKMGKALSFFAKSKRFSLYQC 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9191434 9196680 - CmaCh04G018230.1 Cma04g01823 292904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01823 770 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Cma04g01823 770 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 7 1 730 - -
Cma04g01823 770 PANTHER U BOX DOMAIN-CONTAINING 1 730 - -
Cma04g01823 770 CDD RING-Ubox_PUB 284 326 IPR045210 -
Cma04g01823 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cma04g01823 770 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Cma04g01823 770 SUPERFAMILY ARM repeat 435 702 IPR016024 -
Cma04g01823 770 Gene3D - 400 730 IPR011989 -
Cma04g01823 770 SMART arm_5 507 545 IPR000225 GO:0005515
Cma04g01823 770 SMART arm_5 461 505 IPR000225 GO:0005515
Cma04g01823 770 SMART arm_5 546 587 IPR000225 GO:0005515
Cma04g01823 770 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Cma04g01823 770 SUPERFAMILY RING/U-box 279 356 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01823 Cma18g00710 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01823 Cma-Chr4:9191434 Cma16g00618 Cma-Chr16:3193789 1.35E-74 dispersed
Cma12g00066 Cma-Chr12:239998 Cma04g01823 Cma-Chr4:9191434 0 wgd
Cma18g00710 Cma-Chr18:6460697 Cma04g01823 Cma-Chr4:9191434 0 wgd
Cma04g01823 Cma-Chr4:9191434 Cma05g00083 Cma-Chr5:352529 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01823 - - csv:101210079 1370.53