Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01825 ATGATGGAGAATAATCTGCTGTTTCTTGTCCTCGATTTGGTTTTGTTTTTGCACTTTCAGGTCTCTTTTAGGGCATTTTCCCTCTCGCCGGACGGTCTCTCGCTTCTTTCTCTCAAGTCGGCGGTCGACCAGTCGCCTGATTCCTCTGTTTTCTCCGATTGGAACGAGGATGACTCTACGCCTTGTCGATGGTCTGGCATTTCTTGTATGAATGTTTCTGGCGACCCGCGTGTCGTTGGGATTGCTCTCTCTGGTAAGAATCTCCATGGCTATATTCCTTCTGAGCTTGGGTCGCTTGTCTATCTCCGGCGATTGAACCTCCATAACAATAATTTCTACGGCTCCATACCTGAGCAGTTGTTTAATGCTACCTCATTGCATAGCTTATTTCTCTATAGCAATAATCTATCTGGTTCTTTTCCCCCTTCGATCTGCAACATTCCGAGGCTTCAGAACCTCGATCTCTCCAATAATTCTCTCGCCGGACCAATTCCCGACGAATTGAAGAATTGTAAACAGTTGCAGCATTTAATACTCGCCAGAAATCAATTTGACGGAGAAATCCCGTCTGGTATGTGGTCAAGGATGGATAATTTACTTCAACTCGATCTCTCATCCAACGATTTCAGTGGATCGATTCCGGAGGATTTGGGGGAACTGAAGACACTAACCGGTACGCTGAACCTGTCCTTCAATCATTTATCGGGTAAAATTCCGAAGACTCTTGGAGATTTGCCGGTGACTGTGAGTTTCGACCTTCGGAGCAACAATCTGAGCGGAAGCATACCACAGACGGGTTCCTTCGCGAATCAGGGACCGACTGCATTTCTCAATAATCCTGACTTGTGCGGATTTCCTCTTCAGAAATCTTGTGGGAATTCAGAACGTGGCTCACCGGGTAATCCGGATACTAAGCCATCTTACACTGCTCCTAGAAAAGGATTGAGCGCCGGACTAATCGTTCTCATCTCAGCCGCCGACGCCGCCGGAGTAGCGTTTATCGGTCTGATAATAGTATACATATATTGGCGAAGGAAGGACGATTCGAACGGCTGTAGCTGTACGGCCAAAAGAAAATTCGGTGGGAACCAGAAAGATCTCTGCAGTTTTCCTTGTATGAATGGACAAGATAAGAATGAGGAGTCCGAAATGGAGGAGCCGGAGAACAGTGACAGAAGCAAAGAAGAAGGAGGGCTTGTGGCCATAGACAAAGGCTTTACGTTCGAGCTCGACGAGCTACTGAGAGCATCAGCCTATGTGCTGGGAAAGAGTGGACTAGGGATTGTGTACAAAGTGGTCCTTGGAAATGGGATTCCGGTGGCCGTACGGCGGGTGGGCGAAGGCGGAGAACAGAGGTATAAAGAGTTCGTGGCGGAGGTGCAGGCCATTGGAAGGGTAAAGCATCCCAATATCGTGAAACTGAGAGCTTATTATTGGGCGCCGGATGAGAAGCTTCTGATCAGTGATTTTATCTCCAATGGAAACTTGGCCTCTGCACTTCACGGGAGAAACGGGCAGCCATCTTCAGTGCTTTCATGGTCAACGAGACTGAGAATTGCCAAGGGAACCGCAAGGGGGTTGGCTTATCTACACGAATGCAGTCCAAGAAAATTCGTCCATGGCGACATCAAGCCCTCCAACATTCTCCTCGACAACGATTTCCAGCCCCACATCTCTGACTTCGGCCTCAACCGTTTGATCAGCATCACCGGCGACAACCCCTCCTCCTCCGGCGGCCTCATTGGCGGCGCCTTCTCATACCTCAAGTCCGTCCAAACCGAACGCACCAACAACTACTGCGCGCCGGAGGCCCGTACCCCTGGCGGTCGTCCCACCCAAAAATGGGACGTTTATTCCTTCGGAGTCATGGTCCTCGAATTGCTCACCGGAAAGTCACCGGAGCTTTCTCCCAACACGTCGACTTCTTTGGAGATTCCAGATTTGGTGAGATGGGTCAGAAAAGGATTTGAAGAAGCAAAGCCATTGTCGGATTTGGTTGACCCTGCTCTGCTACAAGAAGTACATGCCAAGAAAGAGGTCCTCGCCGTATTCCACGTGGCGCTCGCTTGTACAGAGAGCGACCCGGAACTCCGGCCTAGAATGAAAACAGTGTCAGAGAGTTTCGACAGGATGGGATCGTAA 2142 49.67 MMENNLLFLVLDLVLFLHFQVSFRAFSLSPDGLSLLSLKSAVDQSPDSSVFSDWNEDDSTPCRWSGISCMNVSGDPRVVGIALSGKNLHGYIPSELGSLVYLRRLNLHNNNFYGSIPEQLFNATSLHSLFLYSNNLSGSFPPSICNIPRLQNLDLSNNSLAGPIPDELKNCKQLQHLILARNQFDGEIPSGMWSRMDNLLQLDLSSNDFSGSIPEDLGELKTLTGTLNLSFNHLSGKIPKTLGDLPVTVSFDLRSNNLSGSIPQTGSFANQGPTAFLNNPDLCGFPLQKSCGNSERGSPGNPDTKPSYTAPRKGLSAGLIVLISAADAAGVAFIGLIIVYIYWRRKDDSNGCSCTAKRKFGGNQKDLCSFPCMNGQDKNEESEMEEPENSDRSKEEGGLVAIDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRVGEGGEQRYKEFVAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALHGRNGQPSSVLSWSTRLRIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFQPHISDFGLNRLISITGDNPSSSGGLIGGAFSYLKSVQTERTNNYCAPEARTPGGRPTQKWDVYSFGVMVLELLTGKSPELSPNTSTSLEIPDLVRWVRKGFEEAKPLSDLVDPALLQEVHAKKEVLAVFHVALACTESDPELRPRMKTVSESFDRMGS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9208413 9212245 + CmaCh04G018250.1 Cma04g01825 292906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01825 713 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Cma04g01825 713 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 712 - -
Cma04g01825 713 ProSiteProfiles Protein kinase domain profile. 415 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01825 713 Gene3D Transferase(Phosphotransferase) domain 1 491 713 - -
Cma04g01825 713 Pfam Protein kinase domain 420 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01825 713 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 13 712 - -
Cma04g01825 713 CDD STKc_IRAK 421 711 - -
Cma04g01825 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672|GO:0006468
Cma04g01825 713 SUPERFAMILY Protein kinase-like (PK-like) 420 705 IPR011009 -
Cma04g01825 713 SUPERFAMILY L domain-like 31 288 - -
Cma04g01825 713 SMART serkin_6 419 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g01825 713 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Cma04g01825 713 Gene3D Phosphorylase Kinase; domain 1 406 490 - -
Cma04g01825 713 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Cma04g01825 713 Gene3D Ribonuclease Inhibitor 192 292 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01825 Cma18g00707 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00081 Cma-Chr3:799037 Cma04g01825 Cma-Chr4:9208413 4.51E-175 dispersed
Cma04g01825 Cma-Chr4:9208413 Cma04g02078 Cma-Chr4:14146147 0 dispersed
Cma20g00971 Cma-Chr20:4949033 Cma04g01825 Cma-Chr4:9208413 5.44E-117 dispersed
Cma18g00707 Cma-Chr18:6442392 Cma04g01825 Cma-Chr4:9208413 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68518 PF00069 Pkinase 5.70E-33 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01825 - - csv:101220493 1313.52