Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01831 ATGTCTCCTTGGATGCTTCCGGTCGGGGCATTTTTCGGACAGATTCCCTTGTGTTGCGGTGATTCGGATGATAAGCGTCGGAGAAGAGAACTGAGAGTTGGAGGAATCGGAGAATTACAGAGATTATTCGGTGCTGAGATGAGCTTAGTCAACACTCACAGAAGCTGCGCGCCAATTCGTTCACTCTCTCCTGCTTCATCCTCCATTTCCCGCTGCGCTCACACTTCCTCCGCTGATCATGTGACGTGTGGAACACCAATTTGGATTGGGAAGGGAATCACTTGCATTTGCTTCAAGCGGAAGGGAACTTTTGAACGAGTTTGTATCAACCTGACTCCAGTACAGGAAGATAGGTTAAGAAGATTAAAGCAGCGCATGAAGGTCTACTTTGATGGTTCAAGAATCGACCACCAGGAGGCTTTAAGAGCTCTGTGGTATGCAGCATACCCTGATCAAGAGCTTCAGGCGTTGGTATCAGATCAATGGAAAGAAATGGGATGGCAGGGAAGAGACCCATCAACTGATTTTAGAGGAGCTGGATTTATCTCTTTGGAGAATTTGTTGTTCTTTGCAAAGACGTTCTCAACATCTTTCCAACGTCTATTGAGAAAACAAGGAGGAAAGCCAGCAGTGTGGGAATATCCCTTTGCTGTTGCTGGTGTAAACATCACATTTATGCTAATGCAAATGCTTGATCTTGATGTTTCAAAACCAAGGACCTTTATCAGATCAGTTTTCCTACAGATGTTATCAGAGAATGAATGGGCATTTGACCTGCTTTACTGCGTGGCCTTCGTTGTTATGGACAAACAATGGCTGGAAAGAAATGCTACCTACATGGAGTTCAATGATGTGTTGAAGTCCACCAGAGCTCAATTGGAGAAAGAACTTTTAATGGAGGATGTGTTGCGGATTGAAGATATGCCTTCTTACAACCTTCTTCTAACATTGGATTACAGTTAG 963 44.24 MSPWMLPVGAFFGQIPLCCGDSDDKRRRRELRVGGIGELQRLFGAEMSLVNTHRSCAPIRSLSPASSSISRCAHTSSADHVTCGTPIWIGKGITCICFKRKGTFERVCINLTPVQEDRLRRLKQRMKVYFDGSRIDHQEALRALWYAAYPDQELQALVSDQWKEMGWQGRDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKPAVWEYPFAVAGVNITFMLMQMLDLDVSKPRTFIRSVFLQMLSENEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLEKELLMEDVLRIEDMPSYNLLLTLDYS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9243157 9248459 + CmaCh04G018310.1 Cma04g01831 292912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01831 320 PANTHER ELMO/CED-12 FAMILY PROTEIN 45 314 - -
Cma04g01831 320 Pfam ELMO/CED-12 family 121 286 IPR006816 -
Cma04g01831 320 ProSiteProfiles ELMO domain profile. 136 297 IPR006816 -
Cma04g01831 320 PANTHER ENGULFMENT AND CELL MOTILITY 45 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01831 K23538 ELMOD; ELMO domain-containing protein - csv:101212364 519.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00168 Cma-Chr3:2215999 Cma04g01831 Cma-Chr4:9243157 2.10E-91 dispersed
Cma04g01831 Cma-Chr4:9243157 Cma08g00153 Cma-Chr8:833837 4.42E-110 dispersed
Cma18g00700 Cma-Chr18:6382804 Cma04g01831 Cma-Chr4:9243157 1.20E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1240 . . . . . . . . Cmo04g01927 . . . . . Sed06g1749 . . Bhi07g01921 Tan04g0051 Cmetu10g1689 Lac13g0056 Hepe10g1520 . . . . . . . . . . . . . Lsi04g00678 . Chy11g01760 Cme11g02293 Blo02g00171 . . . Bpe14g00771 . . . . . . Cma04g01831 . . . . . . . . . . . . Cla11g01342 Cam11g1400 Cec11g1423 Cco11g1419 Clacu11g1557 Cmu11g1378 Cre11g1798 Lsi09g01690 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013803 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01831 Cma_Chr04 FPKM 0.0 0.0 3.747516 3.446267 3.154021 2.904958 3.203925 0.0 0.0 0.0