Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01834 ATGAAGTTCATCATGGAGTTTGCTGAGAATTTGGTACTAAGACTTATGGAGGATCCAAAAGAGAGGGATCGGAAGTTCCGAGAGCACGTGTACGCGGTGAAGGATCGATGCCAAAAGACGAAGGAGATGTGGAGCTATCCGATCCGTCCTTACGGATTTTGGACATTTGAGCGCCACAATTGTCAGCTGCGGTGGGACGCACAAATTAGCCAGGTTCCTGGTAGGAGGGATCCTTACGATGATTTGCTTACGGACATCAACAATAACTCCAAGTGA 276 47.83 MKFIMEFAENLVLRLMEDPKERDRKFREHVYAVKDRCQKTKEMWSYPIRPYGFWTFERHNCQLRWDAQISQVPGRRDPYDDLLTDINNNSK 91
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9252598 9253451 - CmaCh04G018340.1 Cma04g01834 292915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01834 91 Pfam NADH-ubiquinone oxidoreductase 11 kDa subunit 1 85 IPR035204 -
Cma04g01834 91 PANTHER EXPRESSED PROTEIN 1 90 IPR035204 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01834 - - - csv:101213251 179.874
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01834 Cma18g00696 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00696 Cma-Chr18:6370210 Cma04g01834 Cma-Chr4:9252598 7.53E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1249 Blo01g00355 . Bda01g02178 . . . . . Cmo04g01930 Cmo18g00683 . Cma18g00696 . Car18g00646 Sed06g1752 Cpe09g00589 Cpe01g01615 Bhi07g01925 Tan04g0046 Cmetu10g1535 . . . . . . . . . . . . . . . Lsi04g00681 . . Cme10g00662 . . . . . . Bma01g00008 . . . . Cma04g01834 . . . . . . . . . . . . Cla11g01339 Cam11g1397 Cec11g1419 Cco11g1416 Clacu11g1554 Cmu11g1375 Cre11g1795 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009891 1 2 1 1 0 1 2 1 1 1 1 0 2 1 1 2 0 1 2 1 1 1 1 2 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g01834 Cma_Chr04 FPKM 64.123482 77.721588 43.592796 44.641594 49.529499 55.273163 48.469109 143.769501 150.932602 146.053787