Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g01836 ATGGCCTCCGCTTGTGCTTCTTCCGCCATCGCCGCGGTGGCAATTTCTTCTTCCAGTTCCCAGAAGAATGGATGCCCCAAGGTTTCTAATTTCCTAACCGGCAAGAGGCTCAGGCTGAGAAAGTACACTGCTGCGGCTGTTGCTCCTCGATCAGCTCCGGTGTGCGCCGCCGCCGACCCTGACAGACCACTCTGGTTCCCTGGCAGCACCCCTCCCCCATGGCTCGACGGCAGCCTCCCCGGTGACTTTGGCTTTGATCCACTTGGTCTCTCTTCTGATCCGGAGAGCTTGAGATGGAACCAGCAAGCAGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGGATTTTCATCCCGGAATTCTTGACGAAGATCGGAATTCTTAACACCCCGTCGTGGTACACTGCCGGAGAATTGGAATACTTCACCGATACCACCACTCTGTTCATTGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGGTGGGCCGACATTCTGAAACCTGGTTGCGTTAACACTGACCCGATCTTCCCCAACAACAAGCTAACCGGAACCGACGTCGGGTACCCTGGTGGCCTGTGGTTCGACCCACTCGGTTGGGGTAGCGGGTCACCCGAAAAGATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGACTGGCTATGTTGGCGGTGATGGGCGCGTGGTTCCAACACATTTACACCGGCACCGGTCCCATCGACAACCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCGTGAGTTTTTAA 798 56.89 MASACASSAIAAVAISSSSSQKNGCPKVSNFLTGKRLRLRKYTAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9264652 9265625 + CmaCh04G018360.1 Cma04g01836 292917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g01836 265 SUPERFAMILY Chlorophyll a-b binding protein 58 262 - -
Cma04g01836 265 Pfam Chlorophyll A-B binding protein 71 237 IPR022796 -
Cma04g01836 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 263 IPR001344 GO:0009765|GO:0016020
Cma04g01836 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 263 - -
Cma04g01836 265 Gene3D Chlorophyll a/b binding protein domain 72 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01836 Cma-Chr4:9264652 Cma11g00746 Cma-Chr11:3627834 8.91E-103 dispersed
Cma11g01642 Cma-Chr11:10800460 Cma04g01836 Cma-Chr4:9264652 7.70E-35 transposed
Cma15g00603 Cma-Chr15:2856967 Cma04g01836 Cma-Chr4:9264652 9.83E-35 transposed
Cma18g00694 Cma-Chr18:6352027 Cma04g01836 Cma-Chr4:9264652 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g01836 K08908 - csv:101214055 506.908